Rv0056

Tuberculist information
Gene namerplI
Protein function50S ribosomal protein L9 RplI
Functional category(tuberculist)information pathways
Gene location(kb)59.409
Molecular mass(da)16169.6
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 152
	  		  	1    MKLILTADVDHLGSIGDTVEVKDGYGRNFLLPRGLAIVASRGAQKQADEIRRARETKSVR   60
			  	61   DLEHANEIKAAIEALGPIALPVKTSADSGKLFGSVTAADVVAAIKKAGGPNLDKRIVRLP  120
			  	121  KTHIKAVGTHFVSVHLHPEIDVEVSLDVVAQS

Known structures in the PDB
No Known structures
1 16 31 46 61 76 91 106 121 136 151 Range: 1 to 48  |  Coverage: 30% Ribosomal_L9_N Range: 62 to 151  |  Coverage: 58% Ribosomal_L9_C Range: 1 to 151  |  Coverage: 98% 1 Range: 1 to 152  |  Coverage: 99% 1 Range: 59 to 152  |  Coverage: 61% 2 Range: 1 to 52  |  Coverage: 33% 3
Number of amino acids : 152
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ribosomal_L9_NPF012811-48
Ribosomal_L9_CPF0394862-151
Mtb Structural Proteome models
Model Number1
Model nameRv0056
Template2AW4    HPDBCREDO
Template coverage1_149
Template Identity(%)38.9
Model coverage(%)98.7
Normalized DOPE score0.81

Structure Models from Chopin
Model Number1
Profiled.100.1.1, d.99.1.1
Click for model details
zscore35.36
Residue begin1
Residue end152
Model Number2
Profile3.10.430.100
Click for model details
zscore22.26
Residue begin59
Residue end152
Model Number3
Profiled.100.1.1 - 3.40.5.10
Click for model details
zscore21.93
Residue begin1
Residue end52
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv0056Gene nameConfidence Score
Rv0641rplA0.999
Rv0053rpsF0.999
Rv0055rpsR10.996
Rv0640rplK0.996
Rv0719rplF0.996
Rv0640rplK0.996
Rv1643rplT0.996
Rv0652rplL0.996
Rv0720rplR0.994
Rv2904crplS0.994
Rv1015crplY0.993
Rv1015crplY0.993
Rv2441crpmA0.993
Rv3456crplQ0.993
Rv0708rplP0.992
Rv0702rplD0.992
Rv0701rplC0.991
Rv0716rplE0.991
Rv0716rplE0.991
Rv0704rplB0.99
Rv0704rplB0.99
Rv2442crplU0.99
Rv0703rplW0.99
Rv0706rplV0.989
Rv3443crplM0.988
Rv0723rplO0.988
Rv0651rplJ0.987
Rv0714rplN0.985
Rv2889ctsf0.983
Rv2889ctsf0.983
Rv3459crpsK0.982
Rv0684fusA10.979
Rv0684fusA10.979
Rv0684fusA10.979
Rv0684fusA10.979
Rv0684fusA10.979
Rv1298rpmE0.979
Rv0715rplX0.978
Rv0058dnaB0.977
Rv0058dnaB0.977
Rv0058dnaB0.977
Rv0058dnaB0.977
Rv2412rpsT0.973
Rv2882cfrr0.971
Rv2785crpsO0.97
Rv2890crpsB0.968
Rv3458crpsD0.968
Rv3458crpsD0.968
Rv0705rpsS0.966
Rv2057crpmG10.966
Rv0683rpsG0.965
Rv0041leuS0.965
Rv0041leuS0.965
Rv0041leuS0.965
Rv2058crpmB20.962
Rv0700rpsJ0.96
Rv0721rpsE0.959
Rv2055crpsR20.959
Rv0721rpsE0.959
Rv3457crpoA0.957
Rv3457crpoA0.957
Rv3457crpoA0.957
Rv0634BrpmG20.955
Rv3442crpsI0.954
Rv0707rpsC0.952
Rv0707rpsC0.952
Rv2534cefp0.95
Rv2534cefp0.95
Rv2534cefp0.95
Rv0054ssb0.95
Rv2909crpsP0.949
Rv0682rpsL0.948
Rv0710rpsQ0.945
Rv3913trxB20.942
Rv3913trxB20.942
Rv0718rpsH0.942
Rv1292argS0.938
Rv1292argS0.938
Rv1292argS0.938
Rv3460crpsM0.938
Rv0722rpmD0.937
Rv0685tuf0.936
Rv0685tuf0.936
Rv0685tuf0.936
Rv2916cffh0.932
Rv2916cffh0.932
Rv2916cffh0.932
Rv2364cera0.931
Rv2462ctig0.931
Rv2364cera0.931
Rv2462ctig0.931
Rv2462ctig0.931
Rv1023eno0.928
Rv1023eno0.928
Rv2992cgltS0.926
Rv2783cgpsI0.925
Rv2783cgpsI0.925
Rv2783cgpsI0.925
Rv2783cgpsI0.925
Rv2783cgpsI0.925
Rv2839cinfB0.923
Rv2839cinfB0.923
Rv2839cinfB0.923
Rv2839cinfB0.923
Rv0357cpurA0.921
Rv1641infC0.92
Rv1641infC0.92
Rv2572caspS0.917
Rv2572caspS0.917
Rv2572caspS0.917
Rv3461crpmJ0.916
Rv1112Rv11120.915
Rv1112Rv11120.915
Rv3336ctrpS0.915
Rv3924crpmH0.915
Rv0732secY0.911
Rv1017cprsA0.908
Rv1017cprsA0.908
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
zincPubChem0.78465.409
magnesiumPubChem0.78424.305