Rv3924c

Tuberculist information
Gene namerpmH
Protein function50S ribosomal protein L34 RpmH
Functional category(tuberculist)information pathways
Gene location(kb)4410.79
Molecular mass(da)5592.55
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 47
	  		  	1    VTKGKRTFQPNNRRRARVHGFRLRMRTRAGRSIVSSRRRKGRRTLSA

Known structures in the PDB
No Known structures
1 5 9 13 17 21 25 29 33 37 41 Range: 4 to 47  |  Coverage: 91% Ribosomal_L34 Range: 5 to 46  |  Coverage: 87% 1
Number of amino acids : 47
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ribosomal_L34PF004684-47
Mtb Structural Proteome models
Model Number1
Model nameRv3924c
Template2AW4    2PDBCREDO
Template coverage2_43
Template Identity(%)54.8
Model coverage(%)87.2
Normalized DOPE score0.432

Structure Models from Chopin
CHOPIN models not available for this query
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv3924cGene nameConfidence Score
Rv0001dnaA0.992
Rv0001dnaA0.992
Rv3923crnpA0.988
Rv0002dnaN0.988
Rv0002dnaN0.988
Rv0002dnaN0.988
Rv0003recF0.978
Rv1643rplT0.968
Rv0005gyrB0.966
Rv0005gyrB0.966
Rv0005gyrB0.966
Rv0005gyrB0.966
Rv0708rplP0.951
Rv0714rplN0.951
Rv3922cRv3922c0.951
Rv0703rplW0.95
Rv3917cparB0.949
Rv3917cparB0.949
Rv1298rpmE0.948
Rv0719rplF0.947
Rv0720rplR0.946
Rv3461crpmJ0.945
Rv3443crplM0.943
Rv3919cgid0.942
Rv0652rplL0.942
Rv2441crpmA0.941
Rv0701rplC0.939
Rv2442crplU0.935
Rv0702rplD0.935
Rv0704rplB0.931
Rv0704rplB0.931
Rv0706rplV0.931
Rv3921cRv3921c0.927
Rv0006gyrA0.923
Rv0006gyrA0.923
Rv2057crpmG10.921
Rv3920cRv3920c0.916
Rv3920cRv3920c0.916
Rv0056rplI0.915
Rv0056rplI0.915
Rv1010ksgA0.913
Rv3918cparA0.911
Rv0641rplA0.91
Rv0716rplE0.908
Rv0716rplE0.908
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
magnesiumPubChem0.78924.305
zincPubChem0.78965.409
bryamycinPubChem0.7081664.89
nchembio.341-comp1PubChem0.7081664.89
(1R,2R,4R,6R,7R,8R,10S,13R,14S)-7-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-1PubChem0.707812.004
telithromycinPubChem0.707812.004