Rv0055

Tuberculist information
Gene namerpsR1
Protein function30S ribosomal protein S18-1 RpsR1
Functional category(tuberculist)information pathways
Gene location(kb)59.122
Molecular mass(da)9543.21
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 84
	  		  	1    MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQH   60
			  	61   QRDIALAVKNAREVALLPFTSSVR

Known structures in the PDB
No Known structures
1 9 17 25 33 41 49 57 65 73 81 Range: 24 to 77  |  Coverage: 63% Ribosomal_S18 Range: 29 to 83  |  Coverage: 64% 1 Range: 14 to 84  |  Coverage: 83% 1
Number of amino acids : 84
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ribosomal_S18PF0108424-77
Mtb Structural Proteome models
Model Number1
Model nameRv0055
Template2AVY    RPDBCREDO
Template coverage19_73
Template Identity(%)49.1
Model coverage(%)63.5
Normalized DOPE score0.173

Structure Models from Chopin
Model Number1
Profilea.4.8.1 - 4.10.640.10
Click for model details
zscore19.06
Residue begin14
Residue end84
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv0055Gene nameConfidence Score
Rv0053rpsF0.998
Rv0056rplI0.996
Rv0056rplI0.996
Rv0054ssb0.986
Rv0683rpsG0.985
Rv0634BrpmG20.982
Rv2909crpsP0.971
Rv2057crpmG10.965
Rv0682rpsL0.964
Rv0640rplK0.961
Rv0640rplK0.961
Rv0718rpsH0.96
Rv0651rplJ0.96
Rv3460crpsM0.959
Rv2056crpsN20.958
Rv3459crpsK0.957
Rv3458crpsD0.955
Rv3458crpsD0.955
Rv2058crpmB20.954
Rv2441crpmA0.953
Rv2412rpsT0.952
Rv2442crplU0.951
Rv1643rplT0.951
Rv0721rpsE0.948
Rv0721rpsE0.948
Rv0700rpsJ0.945
Rv3442crpsI0.944
Rv3456crplQ0.943
Rv0058dnaB0.942
Rv0058dnaB0.942
Rv1298rpmE0.942
Rv0058dnaB0.942
Rv0058dnaB0.942
Rv0705rpsS0.941
Rv0641rplA0.941
Rv0707rpsC0.94
Rv0707rpsC0.94
Rv1015crplY0.938
Rv1015crplY0.938
Rv0717rpsN10.935
Rv0701rplC0.933
Rv0652rplL0.933
Rv0708rplP0.932
Rv0702rplD0.93
Rv3443crplM0.929
Rv2785crpsO0.928
Rv0704rplB0.927
Rv0704rplB0.927
Rv0710rpsQ0.919
Rv2904crplS0.913
Rv0720rplR0.911
Rv2890crpsB0.908
Rv0714rplN0.903
Rv1017cprsA0.902
Rv1017cprsA0.902
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
No high confidence interactions