Rv2412

Tuberculist information
Gene namerpsT
Protein function30S ribosomal protein S20 RpsT
Functional category(tuberculist)information pathways
Gene location(kb)2710.07
Molecular mass(da)9372.81
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 86
	  		  	1    VANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDK   60
			  	61   AASKGVIHKNQAANKKSALAQALNKL

Known structures in the PDB
No Known structures
1 9 17 25 33 41 49 57 65 73 81 Range: 2 to 85  |  Coverage: 96% Ribosomal_S20p Range: 6 to 86  |  Coverage: 93% 1 Range: 2 to 86  |  Coverage: 97% 1
Number of amino acids : 86
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ribosomal_S20pPF016492-85
Mtb Structural Proteome models
Model Number1
Model nameRv2412
Template1FJG    TPDBCREDO
Template coverage11_91
Template Identity(%)35.8
Model coverage(%)93.0
Normalized DOPE score-1.287

Structure Models from Chopin
Model Number1
Profilea.7.6.1 - 1.20.58.110
Click for model details
zscore15.47
Residue begin2
Residue end86
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv2412Gene nameConfidence Score
Rv2785crpsO0.995
Rv0700rpsJ0.987
Rv3442crpsI0.984
Rv2909crpsP0.982
Rv0683rpsG0.982
Rv0721rpsE0.979
Rv0721rpsE0.979
Rv2890crpsB0.977
Rv0053rpsF0.977
Rv0718rpsH0.974
Rv0056rplI0.973
Rv2442crplU0.973
Rv0056rplI0.973
Rv3459crpsK0.971
Rv0682rpsL0.971
Rv2441crpmA0.97
Rv3460crpsM0.968
Rv0710rpsQ0.968
Rv0707rpsC0.965
Rv0707rpsC0.965
Rv1641infC0.963
Rv3443crplM0.963
Rv1641infC0.963
Rv2904crplS0.963
Rv0705rpsS0.962
Rv3458crpsD0.956
Rv3458crpsD0.956
Rv0055rpsR10.952
Rv1298rpmE0.951
Rv3456crplQ0.949
Rv0651rplJ0.934
Rv1643rplT0.932
Rv0640rplK0.93
Rv0640rplK0.93
Rv0719rplF0.926
Rv2889ctsf0.919
Rv2889ctsf0.919
Rv2882cfrr0.918
Rv1297rho0.907
Rv1297rho0.907
Rv1297rho0.907
Rv0001dnaA0.906
Rv0001dnaA0.906
Rv3457crpoA0.901
Rv3457crpoA0.901
Rv3457crpoA0.901
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
spectinomycinPubChem0.784332.35
magnesiumPubChem0.78424.305
guanosine diphosphatePubChem0.784443.201
adenosine monophosphatePubChem0.707347.221