Gene name | rho |
Protein function | Probable transcription termination factor Rho homolog |
Functional category(tuberculist) | information pathways |
Gene location(kb) | 1453.2 |
Molecular mass(da) | 65101.4 |
External sites | TB Database TubercuList WebTB |
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1 VTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 61 RKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQV 120 121 RPERRSATREAGPSGSGERAGTAADDTDNRQGGQQDAKTEERGTDAGGDQGGDQQASGGQ 180 181 QARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVR 240 241 TSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGG 300 301 SVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDLIMPIGKGQRALIVSPPKAGKT 360 361 TILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAEL 420 421 AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR 480 481 NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGT 540 541 RKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGSMD 600 601 SD
Structural/Functional domain family | Pfam acc.no./SCOP ID | Domain Region | |
---|---|---|---|
Rho_N | PF07498 | 36-78 | |
Rho_RNA_bind | PF07497 | 225-304 | |
ATP-synt_ab | PF00006 | 332-540 |
Model Number | 1 |
Profile | b.40.4.5, c.37.1.11 - 2.40.50.140, 3.40.50.300 Click for model details |
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zscore | 84.23 |
Residue begin | 226 |
Residue end | 592 |
Model Number | 2 |
Profile | a.140.3.1, b.40.4.5, c.37.1.11 - 2.40.50.140, 3.40.50.300 Click for model details |
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zscore | 82.26 |
Residue begin | 32 |
Residue end | 592 |
Model Number | 3 |
Profile | c.46.1.4 Click for model details |
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zscore | 9.35 |
Residue begin | 358 |
Residue end | 478 |
Model Number | 4 |
Profile | c.65.1.1 - 3.40.50.170 Click for model details |
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zscore | 8.69 |
Residue begin | 346 |
Residue end | 566 |
Model Number | 5 |
Profile | a.140.2.1 Click for model details |
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zscore | 4.78 |
Residue begin | 36 |
Residue end | 77 |
Protein interacting with Rv1297 | Gene name | Confidence Score |
---|---|---|
Rv0639 | nusG | 0.992 |
Rv0639 | nusG | 0.992 |
Rv1298 | rpmE | 0.976 |
Rv3457c | rpoA | 0.974 |
Rv3457c | rpoA | 0.974 |
Rv3457c | rpoA | 0.974 |
Rv3458c | rpsD | 0.967 |
Rv3458c | rpsD | 0.967 |
Rv3459c | rpsK | 0.963 |
Rv3456c | rplQ | 0.961 |
Rv0667 | rpoB | 0.95 |
Rv0667 | rpoB | 0.95 |
Rv0667 | rpoB | 0.95 |
Rv0667 | rpoB | 0.95 |
Rv0667 | rpoB | 0.95 |
Rv0667 | rpoB | 0.95 |
Rv1630 | rpsA | 0.947 |
Rv3460c | rpsM | 0.941 |
Rv0701 | rplC | 0.935 |
Rv0721 | rpsE | 0.93 |
Rv0721 | rpsE | 0.93 |
Rv3248c | sahH | 0.929 |
Rv3248c | sahH | 0.929 |
Rv1292 | argS | 0.92 |
Rv1292 | argS | 0.92 |
Rv1292 | argS | 0.92 |
Rv1299 | prfA | 0.919 |
Rv1299 | prfA | 0.919 |
Rv0707 | rpsC | 0.912 |
Rv0703 | rplW | 0.912 |
Rv0707 | rpsC | 0.912 |
Rv0641 | rplA | 0.908 |
Rv2412 | rpsT | 0.907 |
Rv0702 | rplD | 0.906 |
Rv0700 | rpsJ | 0.902 |