Rv2909c

Tuberculist information
Gene namerpsP
Protein function30S ribosomal protein S16 RpsP
Functional category(tuberculist)information pathways
Gene location(kb)3217.16
Molecular mass(da)17437.1
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 162
	  		  	1    MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHPKEEPSLIEINSERAQYWL   60
			  	61   SVGAQPTEPVLKLLKITGDWQKFKGLPGAQGRLKVAAPKPSKLEVFNAALAAADGGPTTE  120
			  	121  ATKPKKKSPAKKAAKAAEPAPQPEQPDTPALGGEQAELTAES

Known structures in the PDB
No Known structures
1 17 33 49 65 81 97 113 129 145 161 Range: 9 to 67  |  Coverage: 35% Ribosomal_S16 Range: 3 to 82  |  Coverage: 48% 1 Range: 2 to 103  |  Coverage: 62% 1
Number of amino acids : 162
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ribosomal_S16PF008869-67
Mtb Structural Proteome models
Model Number1
Model nameRv2909c
Template1FJG    PPDBCREDO
Template coverage2_82
Template Identity(%)50.0
Model coverage(%)48.8
Normalized DOPE score-1.648

Structure Models from Chopin
Model Number1
Profiled.27.1.1 - 3.30.1320.10
Click for model details
zscore28.26
Residue begin2
Residue end103
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv2909cGene nameConfidence Score
Rv2906ctrmD0.999
Rv2904crplS0.996
Rv2907crimM0.993
Rv2907crimM0.993
Rv2908cRv2908c0.989
Rv3459crpsK0.988
Rv0700rpsJ0.988
Rv2442crplU0.987
Rv3460crpsM0.985
Rv0683rpsG0.984
Rv2916cffh0.984
Rv2916cffh0.984
Rv2916cffh0.984
Rv2785crpsO0.984
Rv2412rpsT0.982
Rv0682rpsL0.981
Rv3442crpsI0.979
Rv3456crplQ0.978
Rv0721rpsE0.976
Rv0721rpsE0.976
Rv0685tuf0.974
Rv3458crpsD0.974
Rv0685tuf0.974
Rv2890crpsB0.974
Rv0685tuf0.974
Rv3458crpsD0.974
Rv0707rpsC0.972
Rv0707rpsC0.972
Rv0053rpsF0.971
Rv0055rpsR10.971
Rv3443crplM0.968
Rv0710rpsQ0.964
Rv0718rpsH0.963
Rv1298rpmE0.962
Rv0705rpsS0.959
Rv0717rpsN10.956
Rv2441crpmA0.954
Rv0640rplK0.954
Rv0640rplK0.954
Rv0651rplJ0.952
Rv1641infC0.949
Rv0056rplI0.949
Rv1641infC0.949
Rv0056rplI0.949
Rv2882cfrr0.949
Rv1643rplT0.948
Rv0702rplD0.947
Rv0639nusG0.939
Rv2534cefp0.939
Rv0641rplA0.939
Rv2534cefp0.939
Rv2534cefp0.939
Rv0639nusG0.939
Rv0708rplP0.933
Rv1015crplY0.929
Rv1015crplY0.929
Rv0652rplL0.928
Rv0684fusA10.926
Rv0684fusA10.926
Rv0684fusA10.926
Rv0684fusA10.926
Rv0684fusA10.926
Rv2921cftsY0.923
Rv2921cftsY0.923
Rv3462cinfA0.921
Rv1299prfA0.918
Rv1299prfA0.918
Rv3457crpoA0.918
Rv3457crpoA0.918
Rv3457crpoA0.918
Rv2889ctsf0.916
Rv2889ctsf0.916
Rv2783cgpsI0.912
Rv0719rplF0.912
Rv2783cgpsI0.912
Rv0714rplN0.912
Rv2783cgpsI0.912
Rv2783cgpsI0.912
Rv2783cgpsI0.912
Rv0701rplC0.911
Rv3461crpmJ0.91
Rv0704rplB0.905
Rv0704rplB0.905
Rv0720rplR0.902
Rv0703rplW0.901
Rv0716rplE0.901
Rv0716rplE0.901
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
No high confidence interactions