Rv2907c

Tuberculist information
Gene namerimM
Protein functionProbable 16S rRNA processing protein RimM
Functional category(tuberculist)information pathways
Gene location(kb)3216.36
Molecular mass(da)18616
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 176
	  		  	1    MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR   60
			  	61   QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG  120
			  	121  VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE

Known structures in the PDB
No Known structures
1 18 35 52 69 86 103 120 137 154 171 Range: 4 to 93  |  Coverage: 50% RimM Range: 100 to 173  |  Coverage: 41% PRC Range: 3 to 168  |  Coverage: 93% 1 Range: 1 to 172  |  Coverage: 97% 1 Range: 1 to 96  |  Coverage: 53% 2 Range: 98 to 172  |  Coverage: 42% 3
Number of amino acids : 176
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
RimMPF017824-93
PRCPF05239100-173
Mtb Structural Proteome models
Model Number1
Model nameRv2907c
Template2F1L    APDBCREDO
Template coverage9_171
Template Identity(%)31.0
Model coverage(%)93.8
Normalized DOPE score-0.244

Structure Models from Chopin
Model Number1
Profileb.41.1.4, b.43.3.4 - 2.30.30.240, 2.40.30.60
Click for model details
zscore30.93
Residue begin1
Residue end172
Model Number2
Profileb.43.3.4
Click for model details
zscore19.82
Residue begin1
Residue end96
Model Number3
Profile2.30.30.240
Click for model details
zscore15.01
Residue begin98
Residue end172
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv2907cGene nameConfidence Score
Rv2906ctrmD0.998
Rv2909crpsP0.993
Rv2904crplS0.985
Rv2908cRv2908c0.981
Rv0705rpsS0.976
Rv2916cffh0.956
Rv2916cffh0.956
Rv2916cffh0.956
Rv3460crpsM0.938
Rv0682rpsL0.928
Rv3456crplQ0.926
Rv3457crpoA0.925
Rv3457crpoA0.925
Rv3457crpoA0.925
Rv1298rpmE0.911
Rv2889ctsf0.904
Rv2889ctsf0.904
Rv0732secY0.903
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
selenomethioninePubChem0.752196.106
SeMetPubChem0.752196.106