Rv0709

Tuberculist information
Gene namerpmC
Protein function50S ribosomal protein L29 RpmC
Functional category(tuberculist)information pathways
Gene location(kb)805.526
Molecular mass(da)8859.01
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 77
	  		  	1    MAVGVSPGELRELTDEELAERLRESKEELFNLRFQMATGQLNNNRRLRTVRQEIARIYTV   60
			  	61   LRERELGLATGPDGKES

Known structures in the PDB
No Known structures
1 8 15 22 29 36 43 50 57 64 71 Range: 7 to 64  |  Coverage: 74% Ribosomal_L29 Range: 5 to 70  |  Coverage: 84% 1 Range: 3 to 71  |  Coverage: 88% 1
Number of amino acids : 77
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ribosomal_L29PF008317-64
Mtb Structural Proteome models
Model Number1
Model nameRv0709
Template1R73    APDBCREDO
Template coverage1_66
Template Identity(%)50.0
Model coverage(%)84.4
Normalized DOPE score-1.368

Structure Models from Chopin
Model Number1
Profilea.2.2.1 - 1.10.287.310
Click for model details
zscore14.49
Residue begin3
Residue end71
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv0709Gene nameConfidence Score
Rv0708rplP0.999
Rv0710rpsQ0.999
Rv0706rplV0.998
Rv0701rplC0.998
Rv0707rpsC0.998
Rv0707rpsC0.998
Rv0720rplR0.997
Rv0702rplD0.997
Rv0703rplW0.997
Rv0704rplB0.997
Rv0704rplB0.997
Rv0719rplF0.997
Rv0714rplN0.997
Rv0705rpsS0.996
Rv0700rpsJ0.994
Rv0716rplE0.994
Rv0716rplE0.994
Rv0723rplO0.994
Rv0718rpsH0.994
Rv0715rplX0.993
Rv3456crplQ0.993
Rv0640rplK0.988
Rv0640rplK0.988
Rv0721rpsE0.986
Rv0721rpsE0.986
Rv0717rpsN10.983
Rv3458crpsD0.98
Rv3458crpsD0.98
Rv0651rplJ0.979
Rv0641rplA0.977
Rv3459crpsK0.974
Rv3460crpsM0.972
Rv3461crpmJ0.971
Rv3443crplM0.971
Rv0683rpsG0.967
Rv3457crpoA0.966
Rv3457crpoA0.966
Rv3457crpoA0.966
Rv0652rplL0.958
Rv0722rpmD0.95
Rv0682rpsL0.949
Rv2056crpsN20.947
Rv0732secY0.946
Rv0685tuf0.94
Rv0685tuf0.94
Rv0685tuf0.94
Rv0734mapA0.938
Rv3462cinfA0.932
Rv1643rplT0.926
Rv0684fusA10.921
Rv0684fusA10.921
Rv0684fusA10.921
Rv0684fusA10.921
Rv0684fusA10.921
Rv2904crplS0.915
Rv0668rpoC0.914
Rv0668rpoC0.914
Rv0668rpoC0.914
Rv0668rpoC0.914
Rv0668rpoC0.914
Rv2861cmapB0.909
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
No high confidence interactions