Tuberculist information
Gene nameglcB
Protein functionMalate synthase G GlcB
Functional category(tuberculist)intermediary metabolism and respiration
Gene location(kb)2084.76
Molecular mass(da)80403
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 741
	  		  	1    MTDRVSVGNLRIARVLYDFVNNEALPGTDIDPDSFWAGVDKVVADLTPQNQALLNARDEL   60
			  	61   QAQIDKWHRRRVIEPIDMDAYRQFLTEIGYLLPEPDDFTITTSGVDAEITTTAGPQLVVP  120
			  	121  VLNARFALNAANARWGSLYDALYGTDVIPETDGAEKGPTYNKVRGDKVIAYARKFLDDSV  180
			  	181  PLSSGSFGDATGFTVQDGQLVVALPDKSTGLANPGQFAGYTGAAESPTSVLLINHGLHIE  240
			  	241  ILIDPESQVGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLA  300
			  	301  AAVDKDGTAFLRVLNRDRNYTAPGGGQFTLPGRSLMFVRNVGHLMTNDAIVDTDGSEVFE  360
			  	361  GIMDALFTGLIAIHGLKASDVNGPLINSRTGSIYIVKPKMHGPAEVAFTCELFSRVEDVL  420
			  	421  GLPQNTMKIGIMDEERRTTVNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMVRK  480
			  	481  GTMKSQPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMVETKIAQPRAGASTA  540
			  	541  WVPSPTAATLHALHYHQVDVAAVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDN  600
			  	601  NCQSILGYVVRWVDQGVGCSKVPDIHDVALMEDRATLRISSQLLANWLRHGVITSADVRA  660
			  	661  SLERMAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELILSGAQQPNGYTEPILHRRRRE  720
			  	721  FKARAAEKPAPSDRAGDDAAR
			  			

Known structures in the PDB
PDB ID1N8I
Total residue count741
Number of chains1
MethodX-RAY
Resolution2.1
PDB ID1N8W
Total residue count1482
Number of chains2
MethodX-RAY
Resolution2.7
PDB ID2GQ3
Total residue count1458
Number of chains2
MethodX-RAY
Resolution2.3
PDB ID3S9I
Total residue count741
Number of chains1
MethodX-RAY
Resolution1.9
PDB ID3S9Z
Total residue count741
Number of chains1
MethodX-RAY
Resolution1.79
PDB ID3SAD
Total residue count741
Number of chains1
MethodX-RAY
Resolution1.82
PDB ID3SAZ
Total residue count741
Number of chains1
MethodX-RAY
Resolution2.04
PDB ID3SB0
Total residue count741
Number of chains1
MethodX-RAY
Resolution2.2
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Malate_synthasePF0127417-699
Mtb Structural Proteome models
Model Number1
Model nameRv1837c_1n8i_A
Template1N8I    APDBCREDO
Template coverage2_727
Template Identity(%)100.0
Model coverage(%)97.8
Normalized DOPE score-1.896

Model Number2
Model nameRv1837c
Template1N8I    APDBCREDO
Template coverage2_727
Template Identity(%)99.9
Model coverage(%)97.8
Normalized DOPE score-1.467

Structure Models from Chopin
Model Number1
Profilec.1.13.1
Click for model details
zscore64.69
Residue begin2
Residue end727
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv1837cGene nameConfidence Score
Rv0467icl10.997
Rv1257cRv1257c0.973
Rv1257cRv1257c0.973
Rv0896gltA20.958
Rv3667acs0.954
Rv3667acs0.954
Rv1916aceAb0.95
Rv0408pta0.944
Rv0408pta0.944
Rv1240mdh0.944
Rv0408pta0.944
Rv1240mdh0.944
Rv1131prpC0.937
Rv2332mez0.931
Rv2332mez0.931
Rv1915aceAa0.924
Rv0904caccD30.92
Rv1836cRv1836c0.919
Rv1836cRv1836c0.919
Rv0889ccitA0.91
Rv2852cmqo0.91
Rv3710leuA0.909
Rv3710leuA0.909
Rv2967cpca0.907
Rv2967cpca0.907
Rv2967cpca0.907
Rv2967cpca0.907
Rv2967cpca0.907
Rv2967cpca0.907
Rv0243fadA20.903
Rv0243fadA20.903
Rv2495cbkdC0.901
Rv2495cbkdC0.901
Rv2495cbkdC0.901
Potential ligand/drug binding sites
Protein ModelPocket NumberDrug Binding Site PMIN ScorePvalue PMINPMAX ScorePvalue PMAX
Rv1837c_1n8i_A32xpv_MIY_A_1209PDBCREDO0.7120.0720.7120.000
Rv1837c_1n8i_A31ya3_STR_B_2001PDBCREDO0.6620.1130.6390.001
Rv1837c_1n8i_A33rif_IVM_B_403PDBCREDO0.6510.1230.6280.001
Rv1837c_1n8i_A33rif_IVM_A_402PDBCREDO0.6510.1240.6280.001
Rv1837c_1n8i_A33rif_IVM_D_402PDBCREDO0.6510.1240.6280.001
Rv1837c_1n8i_A33ri5_IVM_C_350PDBCREDO0.6500.1240.6270.001
Rv1837c_1n8i_A33ria_IVM_C_349PDBCREDO0.6460.1280.6230.001
Rv1837c_1n8i_A31ya3_STR_A_1001PDBCREDO0.6450.1300.6230.001
Rv1837c_1n8i_A33rif_IVM_A_403PDBCREDO0.6440.1310.6210.001
Rv1837c_1n8i_A32aa5_STR_A_301PDBCREDO0.7110.0730.6200.001
Rv1837c_1n8i_A32aa5_STR_B_302PDBCREDO0.7040.0780.6140.002
Rv1837c_1n8i_A31ya3_STR_C_3001PDBCREDO0.6590.1160.6130.002
Rv1837c_1n8i_A31p93_DEX_B_2999PDBCREDO0.6560.1190.6120.002
Rv1837c_1n8i_A31p93_DEX_A_1999PDBCREDO0.6540.1210.6100.002
Rv1837c_1n8i_A33jwq_VIA_D_901PDBCREDO0.6530.1220.6090.002
Rv1837c_1n8i_A33rif_IVM_E_402PDBCREDO0.7050.0770.6080.002
Rv1837c_1n8i_A41fmo_ADN_E_351PDBCREDO0.6840.0930.6080.002
Rv1837c_1n8i_A33rhw_IVM_B_349PDBCREDO0.6990.0820.6030.002
Rv1837c_1n8i_A33jwq_VIA_B_901PDBCREDO0.6250.1510.6030.002
Rv1837c_1n8i_A33rhw_IVM_D_349PDBCREDO0.6970.0830.6020.002
Rv1837c_1n8i_A33ria_IVM_A_348PDBCREDO0.6970.0830.6020.002
Rv1837c_1n8i_A33rhw_IVM_B_348PDBCREDO0.6970.0830.6020.002
Rv1837c_1n8i_A33rhw_IVM_D_348PDBCREDO0.6970.0830.6020.002
Rv1837c_1n8i_A33ria_IVM_C_350PDBCREDO0.6970.0830.6020.002
Rv1837c_1n8i_A32xpw_OTC_A_222PDBCREDO0.7230.0640.6010.002
Rv1837c_1n8i_A33ri5_IVM_D_349PDBCREDO0.6960.0840.6010.002
Rv1837c_1n8i_A32h42_VIA_A_901PDBCREDO0.6440.1300.6010.002
Rv1837c_1n8i_A33ri5_IVM_B_349PDBCREDO0.6950.0850.6000.002
Rv1837c_1n8i_A33ria_IVM_E_348PDBCREDO0.6950.0850.6000.002
Rv1837c_1n8i_A31ict_T44_D_129PDBCREDO0.7470.0500.5960.002
Rv1837c_1n8i_A33rhw_IVM_A_348PDBCREDO0.6910.0880.5960.002
Rv1837c_1n8i_A32vke_TAC_A_222PDBCREDO0.7170.0680.5960.002
Rv1837c_1n8i_A33ri5_IVM_A_349PDBCREDO0.6890.0890.5950.002
Rv1837c_1n8i_A33ria_IVM_E_349PDBCREDO0.6890.0890.5950.002
Rv1837c_1n8i_A32aa6_STR_B_402PDBCREDO0.6790.0980.5920.002
Rv1837c_1n8i_A33e22_LOC_D_700PDBCREDO0.7480.0490.5920.002
Rv1837c_1n8i_A32aa6_STR_A_401PDBCREDO0.6780.0990.5910.002
Rv1837c_1n8i_A32aax_PDN_A_502PDBCREDO0.6780.0990.5910.002
Rv1837c_1n8i_A33h52_486_C_4PDBCREDO0.6120.1650.5910.002
Rv1837c_1n8i_A33e22_LOC_B_700PDBCREDO0.7460.0500.5900.003
Rv1837c_1n8i_A33vhu_SNL_A_1001PDBCREDO0.7430.0520.5880.003
Rv1837c_1n8i_A32aax_PDN_B_503PDBCREDO0.6740.1020.5880.003
Rv1837c_1n8i_A32ab2_SNL_A_502PDBCREDO0.7420.0520.5870.003
Rv1837c_1n8i_A32ab2_SNL_B_503PDBCREDO0.7410.0530.5860.003
Rv1837c_1n8i_A33ut5_LOC_D_502PDBCREDO0.7380.0550.5840.003
Rv1837c_1n8i_A32oax_SNL_C_3001PDBCREDO0.7360.0560.5820.003
Rv1837c_1n8i_A32oax_SNL_B_2001PDBCREDO0.7350.0570.5820.003
Rv1837c_1n8i_A33mne_DEX_A_784PDBCREDO0.6870.0910.5800.003
Rv1837c_1n8i_A32q1v_PDN_A_248PDBCREDO0.5980.1810.5780.003
Rv1837c_1n8i_A32h42_VIA_C_903PDBCREDO0.5990.1810.5780.003
Rv1837c_1n8i_A32trt_TAC_A_222PDBCREDO0.7530.0460.5780.003
Rv1837c_1n8i_A32o7o_DXT_A_222PDBCREDO0.7520.0470.5770.003
Rv1837c_1n8i_A31jg2_ADN_A_500PDBCREDO0.5950.1850.5740.003
Rv1837c_1n8i_A33frq_ERY_B_195PDBCREDO0.7250.0630.5740.003
Rv1837c_1n8i_A31a28_STR_A_1PDBCREDO0.5730.2120.5730.003
Rv1837c_1n8i_A33ut5_LOC_B_502PDBCREDO0.7700.0370.5730.003
Rv1837c_1n8i_A31m2z_DEX_A_301PDBCREDO0.6790.0980.5730.003
Rv1837c_1n8i_A33gn8_DEX_A_247PDBCREDO0.6780.0990.5720.003
Rv1837c_1n8i_A32h42_VIA_B_902PDBCREDO0.5930.1880.5720.003
Rv1837c_1n8i_A31m2z_DEX_D_401PDBCREDO0.6770.0990.5720.003
Rv1837c_1n8i_A31fm6_BRL_D_503PDBCREDO0.5710.2150.5710.004
Rv1837c_1n8i_A33bbt_FMM_D_91PDBCREDO0.6120.1650.5710.004
Rv1837c_1n8i_A33gn8_DEX_B_247PDBCREDO0.6760.1000.5710.004
Rv1837c_1n8i_A31p93_DEX_D_4999PDBCREDO0.6750.1010.5700.004
Rv1837c_1n8i_A31p93_DEX_C_3999PDBCREDO0.6740.1020.5690.004
Rv1837c_1n8i_A33ri5_IVM_E_349PDBCREDO0.7110.0720.5680.004
Rv1837c_1n8i_A41kij_NOV_B_444PDBCREDO0.5650.2240.5650.004
Rv1837c_1n8i_A43k54_1N1_A_1PDBCREDO0.6080.1690.5640.004
Rv1837c_1n8i_A43kw2_ADN_A_300PDBCREDO0.5850.1980.5630.004
Rv1837c_1n8i_A32prg_BRL_A_1PDBCREDO0.5630.2270.5630.004
Rv1837c_1n8i_A31jg3_ADN_A_500PDBCREDO0.6010.1770.5600.004
Rv1837c_1n8i_A33mnp_DEX_A_784PDBCREDO0.7290.0600.5590.004
Rv1837c_1n8i_A33f4x_KLT_A_300PDBCREDO0.6450.1290.5570.004
Rv1837c_1n8i_A33q1e_T44_C_128PDBCREDO0.6450.1290.5570.004
Rv1837c_1n8i_A33mno_DEX_A_784PDBCREDO0.7240.0630.5560.005
Rv1837c_1n8i_A31nhz_486_A_800PDBCREDO0.6150.1610.5550.005
Rv1837c_1n8i_A42fum_MIX_C_2539PDBCREDO0.5950.1850.5510.005
Rv1837c_1n8i_A32oax_SNL_D_4001PDBCREDO0.7620.0410.5500.005
Rv1837c_1n8i_A31lhv_NOG_A_301PDBCREDO0.6710.1050.5480.005
Rv1837c_1n8i_A43kw2_ADN_B_300PDBCREDO0.5910.1900.5460.005
Rv1837c_1n8i_A32prg_BRL_B_2PDBCREDO0.5460.2490.5460.005
Rv1837c_1n8i_A33h52_486_D_2PDBCREDO0.7330.0580.5450.005
Rv1837c_1n8i_A32oax_SNL_E_5001PDBCREDO0.7540.0460.5440.006
Rv1837c_1n8i_A32oax_SNL_A_1001PDBCREDO0.7530.0460.5440.006
Rv1837c_1n8i_A43fuu_ADN_A_0PDBCREDO0.5640.2250.5430.006
Rv1837c_1n8i_A32oax_SNL_F_6001PDBCREDO0.7520.0470.5430.006
Rv1837c_1n8i_A31zgy_BRL_A_503PDBCREDO0.6010.1780.5420.006
Rv1837c_1n8i_A33h0a_9RA_A_500PDBCREDO0.5780.2060.5390.006
Rv1837c_1n8i_A31sa1_POD_D_701PDBCREDO0.7440.0510.5370.006
Rv1837c_1n8i_A31lhu_EST_A_301PDBCREDO0.5360.2630.5360.006
Rv1837c_1n8i_A31sqn_NDR_B_2001PDBCREDO0.5350.2650.5350.006
Rv1837c_1n8i_A33d90_NOG_A_1001PDBCREDO0.5930.1870.5350.006
Rv1837c_1n8i_A33d90_NOG_B_2001PDBCREDO0.5930.1880.5340.006
Rv1837c_1n8i_A31sqn_NDR_A_1001PDBCREDO0.5340.2660.5340.006
Rv1837c_1n8i_A31cil_ETS_A_263PDBCREDO0.5730.2130.5340.006
Rv1837c_1n8i_A33h52_486_B_1PDBCREDO0.7400.0530.5340.006
Rv1837c_1n8i_A32h79_T3_A_1PDBCREDO0.6110.1660.5330.007
Rv1837c_1n8i_A42fum_MIX_A_539PDBCREDO0.5950.1850.5320.007
Rv1837c_1n8i_A33aod_RFP_C_2002PDBCREDO0.5720.2150.5320.007
Rv1837c_1n8i_A33frq_ERY_A_195PDBCREDO0.7810.0330.5310.007
Rv1837c_1n8i_A31mx1_THA_C_3PDBCREDO0.5310.2720.5310.007
Rv1837c_1n8i_A44e3a_ADN_B_500PDBCREDO0.5510.2430.5300.007
Rv1837c_1n8i_A32xn5_FUN_A_1356PDBCREDO0.6900.0890.5290.007
Rv1837c_1n8i_A31sa1_POD_B_700PDBCREDO0.7560.0450.5290.007
Rv1837c_1n8i_A32h77_T3_A_1PDBCREDO0.5860.1960.5280.007
Rv1837c_1n8i_A41lhu_EST_A_301PDBCREDO0.6120.1650.5280.007
Rv1837c_1n8i_A31a28_STR_B_2PDBCREDO0.6460.1280.5280.007
Rv1837c_1n8i_A33qt0_486_A_4PDBCREDO0.5650.2230.5270.007
Rv1837c_1n8i_A42gqg_1N1_A_501PDBCREDO0.5860.1960.5250.007
Rv1837c_1n8i_A43g0e_B49_A_9000PDBCREDO0.5900.1910.5250.007
Rv1837c_1n8i_A33ln1_CEL_D_682PDBCREDO0.5610.2280.5240.008
Rv1837c_1n8i_A43qlg_1N1_A_601PDBCREDO0.5440.2530.5230.008
Rv1837c_1n8i_A31oq5_CEL_A_701PDBCREDO0.5420.2550.5230.008
Rv1837c_1n8i_A33k2h_LYA_B_514PDBCREDO0.5230.2830.5230.008
Rv1837c_1n8i_A43g5d_1N1_A_1PDBCREDO0.5430.2540.5220.008
Rv1837c_1n8i_A33spk_TPV_A_100PDBCREDO0.5780.2060.5210.008
Rv1837c_1n8i_A43qlg_1N1_B_601PDBCREDO0.5410.2560.5210.008
Rv1837c_1n8i_A32xkw_P1B_B_1475PDBCREDO0.5370.2620.5180.008
Rv1837c_1n8i_A31jip_KTN_A_801PDBCREDO0.7020.0790.5180.008
Rv1837c_1n8i_A43g5d_1N1_B_1PDBCREDO0.5370.2630.5170.008
Rv1837c_1n8i_A33oct_1N1_A_663PDBCREDO0.5330.2690.5140.009
Rv1837c_1n8i_A33tkd_CYZ_B_267PDBCREDO0.6900.0890.5130.009
Rv1837c_1n8i_A31ict_T44_C_128PDBCREDO0.6960.0840.5130.009
Rv1837c_1n8i_A33tkd_CYZ_A_266PDBCREDO0.6470.1270.5120.009
Rv1837c_1n8i_A42fum_MIX_D_3539PDBCREDO0.6340.1410.5100.009
Rv1837c_1n8i_A33sxr_1N1_A_1PDBCREDO0.6380.1360.5100.009
Rv1837c_1n8i_A33gws_T3_X_500PDBCREDO0.6030.1750.5090.009
Rv1837c_1n8i_A31jg3_ADN_B_550PDBCREDO0.6120.1640.5090.010
Rv1837c_1n8i_A33h52_486_A_3PDBCREDO0.6840.0940.5090.010
Rv1837c_1n8i_A33o1c_ADN_A_127PDBCREDO0.5450.2500.5080.010
Rv1837c_1n8i_A44e3a_ADN_A_500PDBCREDO0.5940.1860.5070.010
Rv1837c_1n8i_A33bbt_FMM_B_91PDBCREDO0.5860.1970.5060.010
Rv1837c_1n8i_A43sxr_1N1_A_1PDBCREDO0.5460.2500.5050.010
Rv1837c_1n8i_A31jin_KTN_A_801PDBCREDO0.6320.1430.5050.010
Rv1837c_1n8i_A31hwi_115_A_2PDBCREDO0.5780.2060.5040.010
Rv1837c_1n8i_A43tbg_RTZ_A_1PDBCREDO0.6140.1620.5030.010
Rv1837c_1n8i_A44eb4_D16_B_402PDBCREDO0.5030.3140.5030.010
Rv1837c_1n8i_A43sxr_1N1_B_2PDBCREDO0.5650.2240.5020.011
Rv1837c_1n8i_A31s9p_DES_A_459PDBCREDO0.5020.3150.5020.011
Rv1837c_1n8i_A41d4f_ADN_D_604PDBCREDO0.5210.2860.5020.011
Rv1837c_1n8i_A33uvv_T3_A_501PDBCREDO0.6130.1630.5010.011
Rv1837c_1n8i_A31ie4_T44_B_328PDBCREDO0.6030.1750.5010.011
Rv1837c_1n8i_A32ito_IRE_A_2020PDBCREDO0.5810.2030.5010.011
Rv1837c_1n8i_A41d4f_ADN_B_602PDBCREDO0.5200.2880.5000.011
Rv1837c_1n8i_A31fm6_BRL_X_504PDBCREDO0.6120.1650.5000.011
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
glyoxylatePubChem0.99974.0355
malatePubChem0.997134.087
coenzyme APubChem0.994767.534
Co-APubChem0.989767.534
D-malatePubChem0.989134.087
sulfatePubChem0.97796.0626
magnesiumPubChem0.97424.305
acetyl-CoAPubChem0.973809.571
hydron sulfatePubChem0.969196.157
succinatePubChem0.945118.088
reduced nicotinamide adenine dinucleotidePubChem0.918665.441
NAD+PubChem0.904663.425
isocitratePubChem0.9192.124
dihydronicotinamide formycin dinucleotidePubChem0.9665.441
HEPESPubChem0.9238.305
oxaloacetatePubChem0.9132.072
protiumPubChem0.92.01576
deuteriumPubChem0.92.01588
H(+)PubChem0.92.01588
hydroxyl radicalsPubChem0.917.0073
D-isocitratePubChem0.9192.124
acetyl coenzyme-APubChem0.9809.571
DB01992PubChem0.8767.534
selenomethioninePubChem0.762196.106
polyglycolic acidPubChem0.70976.0514
mannitolPubChem0.705182.172
SeMetPubChem0.705196.106
sorbitolPubChem0.705182.172