Tuberculist information
Gene nameligA
Protein functionDNA ligase [NAD dependent] LigA (polydeoxyribonucleotide synthase [NAD+])
Functional category(tuberculist)information pathways
Gene location(kb)3372.54
Molecular mass(da)75257.1
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 691
	  		  	1    VSSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPE   60
			  	61   LRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLC  120
			  	121  ELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLE  180
			  	181  VRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGH  240
			  	241  VEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVK  300
			  	301  VDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAG  360
			  	361  STVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPE  420
			  	421  CGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIA  480
			  	481  DEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPT  540
			  	541  AARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRM  600
			  	601  VDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPG  660
			  	661  SKYDKAVELGVPILDEDGFRRLLADGPASRT
			  			

Known structures in the PDB
PDB ID1ZAU
Total residue count328
Number of chains1
MethodX-RAY
Resolution3.15
PDB ID3SGI
Total residue count615
Number of chains1
MethodX-RAY
Resolution3.5
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
DNA_ligase_adenPF0165311-328
DNA_ligase_OBPF03120330-411
DNA_ligase_ZBDPF03119417-445
HHH_2PF12826527-590
BRCTPF00533607-683
Mtb Structural Proteome models
Model Number1
Model nameRv3014c.4
Template2COK    APDBCREDO
Template coverage2_90
Template Identity(%)20.7
Model coverage(%)12.4
Normalized DOPE score-0.707

Model Number2
Model nameRv3014c.3
Template1X2I    APDBCREDO
Template coverage11_60
Template Identity(%)38.0
Model coverage(%)7.1
Normalized DOPE score-0.442

Model Number3
Model nameRv3014c
Template1ZAU    APDBCREDO
Template coverage8_328
Template Identity(%)100.0
Model coverage(%)46.3
Normalized DOPE score-0.153

Model Number4
Model nameRv3014c.5
Template1L7B    APDBCREDO
Template coverage1_79
Template Identity(%)45.6
Model coverage(%)11.4
Normalized DOPE score-0.055

Model Number5
Model nameRv3014c.2
Template1DGS    APDBCREDO
Template coverage1_581
Template Identity(%)43.5
Model coverage(%)86.1
Normalized DOPE score0.106

Model Number6
Model nameRv3014c_1zau_A
Template1ZAU    APDBCREDO
Template coverage8_328
Template Identity(%)100.0
Model coverage(%)46.3
Normalized DOPE score0.541

Structure Models from Chopin
Model Number1
Profilea.60.2.2, b.40.4.6, d.142.2.2 - 1.10.150.20, 1.10.287.610, 2.40.50.140, 3.30.1490.70, 3.30.470.30
Click for model details
zscore88.5
Residue begin8
Residue end603
Model Number2
Profiled.142.2.2
Click for model details
zscore69.17
Residue begin7
Residue end328
Model Number3
Profile1.10.287.610, 3.30.1490.70, 3.30.470.30
Click for model details
zscore65.36
Residue begin10
Residue end327
Model Number4
Profilea.60.2.2
Click for model details
zscore37.2
Residue begin413
Residue end603
Model Number5
Profile1.10.287.610
Click for model details
zscore16.15
Residue begin8
Residue end77
Model Number6
Profile3.30.1490.70
Click for model details
zscore15.54
Residue begin214
Residue end328
Model Number7
Profilec.15.1.5
Click for model details
zscore11.77
Residue begin607
Residue end683
Model Number8
Profile3.30.470.30
Click for model details
zscore11.12
Residue begin126
Residue end287
Model Number9
Profilec.15.1.5
Click for model details
zscore10.85
Residue begin570
Residue end691
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv3014cGene nameConfidence Score
Rv1633uvrB0.97
Rv1633uvrB0.97
Rv1633uvrB0.97
Rv1633uvrB0.97
Rv0949uvrD10.968
Rv0949uvrD10.968
Rv3455ctruA0.968
Rv1638uvrA0.966
Rv1023eno0.942
Rv1023eno0.942
Rv3356cfolD0.935
Rv3356cfolD0.935
Rv3715crecR0.931
Rv3715crecR0.931
Rv3715crecR0.931
Rv1696recN0.917
Rv3731ligC0.91
Rv3731ligC0.91
Rv0733adk0.909
Rv0938ligD0.902
Rv0938ligD0.902
Rv0938ligD0.902
Rv0938ligD0.902
Rv3240csecA10.901
Rv3240csecA10.901
Rv3240csecA10.901
Potential ligand/drug binding sites
Protein ModelPocket NumberDrug Binding Site PMIN ScorePvalue PMINPMAX ScorePvalue PMAX
Rv3014c.261xkk_FMM_A_91PDBCREDO0.6810.0960.6460.001
Rv3014c.263gp0_NIL_A_1PDBCREDO0.6480.1270.6310.001
Rv3014c.261t46_STI_A_3PDBCREDO0.6200.1560.6200.001
Rv3014c.262xkw_P1B_A_1478PDBCREDO0.6480.1260.5990.002
Rv3014c.2163oht_1N1_A_1000PDBCREDO0.5970.1820.5970.002
Rv3014c.2163kw2_ADN_A_300PDBCREDO0.5930.1880.5930.002
Rv3014c.2163ti1_B49_A_299PDBCREDO0.6380.1370.5910.002
Rv3014c.2311uwj_BAX_A_1723PDBCREDO0.6230.1530.5890.003
Rv3014c.2163g5d_1N1_B_1PDBCREDO0.6330.1410.5870.003
Rv3014c.2163qlg_1N1_A_601PDBCREDO0.6320.1430.5860.003
Rv3014c.2163qlg_1N1_B_601PDBCREDO0.6310.1440.5850.003
Rv3014c.221hwl_FBI_B_1PDBCREDO0.5850.1980.5850.003
Rv3014c.2311t46_STI_A_3PDBCREDO0.6340.1410.5840.003
Rv3014c.221hwl_FBI_D_3PDBCREDO0.5820.2010.5820.003
Rv3014c.2163g5d_1N1_A_1PDBCREDO0.6250.1500.5790.003
Rv3014c.221hwl_FBI_A_2PDBCREDO0.5770.2080.5770.003
Rv3014c.221hwl_FBI_C_4PDBCREDO0.5770.2080.5770.003
Rv3014c.221hwk_117_D_3PDBCREDO0.5930.1870.5760.003
Rv3014c.221hwk_117_A_2PDBCREDO0.5890.1930.5720.003
Rv3014c.221hwk_117_C_4PDBCREDO0.5880.1930.5710.004
Rv3014c.2162zva_1N1_A_513PDBCREDO0.6410.1340.5710.004
Rv3014c.2161kij_NOV_B_444PDBCREDO0.5910.1900.5690.004
Rv3014c.263bjw_SVR_E_503PDBCREDO0.5840.1990.5680.004
Rv3014c.263gcs_BAX_A_401PDBCREDO0.7040.0780.5620.004
Rv3014c.2311xkk_FMM_A_91PDBCREDO0.6430.1320.5620.004
Rv3014c.221hwk_117_B_1PDBCREDO0.6110.1650.5600.004
Rv3014c.223frq_ERY_A_195PDBCREDO0.5910.1900.5570.004
Rv3014c.223ut5_LOC_B_502PDBCREDO0.5730.2130.5560.005
Rv3014c.221z2b_VLB_C_800PDBCREDO0.5550.2360.5550.005
Rv3014c.2161kij_NOV_A_400PDBCREDO0.6620.1130.5540.005
Rv3014c.2163oht_1N1_B_1000PDBCREDO0.6180.1580.5540.005
Rv3014c.2311uwj_BAX_B_1723PDBCREDO0.6380.1360.5530.005
Rv3014c.262qxs_RAL_A_600PDBCREDO0.5830.2000.5530.005
Rv3014c.263cs9_NIL_C_600PDBCREDO0.5510.2430.5510.005
Rv3014c.262qxs_RAL_B_600PDBCREDO0.5810.2030.5500.005
Rv3014c.2162cbr_A80_A_201PDBCREDO0.5480.2470.5480.005
Rv3014c.2162pgf_ADN_A_501PDBCREDO0.5470.2480.5470.005
Rv3014c.2162y7j_B49_B_1294PDBCREDO0.6380.1360.5460.005
Rv3014c.263cs9_NIL_D_600PDBCREDO0.5450.2510.5450.005
Rv3014c.223d91_REM_A_350PDBCREDO0.5610.2280.5450.005
Rv3014c.2162fum_MIX_A_539PDBCREDO0.5860.1970.5440.006
Rv3014c.2311opj_STI_A_3PDBCREDO0.5430.2530.5430.006
Rv3014c.263sm2_478_A_126PDBCREDO0.6020.1760.5430.006
Rv3014c.2163k54_1N1_A_1PDBCREDO0.5630.2270.5420.006
Rv3014c.261uwj_BAX_A_1723PDBCREDO0.6210.1540.5420.006
Rv3014c.2224dta_ADN_A_401PDBCREDO0.6970.0830.5410.006
Rv3014c.2311opj_STI_B_4PDBCREDO0.5410.2570.5410.006
Rv3014c.221hwi_115_B_1PDBCREDO0.5930.1880.5400.006
Rv3014c.2162fum_MIX_D_3539PDBCREDO0.6460.1290.5400.006
Rv3014c.2314asd_BAX_A_1500PDBCREDO0.6230.1530.5400.006
Rv3014c.263cs9_NIL_B_600PDBCREDO0.5690.2190.5390.006
Rv3014c.263bjw_SVR_B_501PDBCREDO0.5670.2200.5380.006
Rv3014c.223ut5_LOC_D_502PDBCREDO0.5900.1910.5380.006
Rv3014c.263b0w_DGX_B_1PDBCREDO0.6000.1790.5380.006
Rv3014c.222nni_MTK_A_501PDBCREDO0.5700.2170.5370.006
Rv3014c.223d91_REM_B_350PDBCREDO0.5530.2400.5370.006
Rv3014c.2313bjw_SVR_E_503PDBCREDO0.5670.2210.5370.006
Rv3014c.223frq_ERY_B_195PDBCREDO0.5880.1930.5360.006
Rv3014c.263cs9_NIL_A_600PDBCREDO0.5810.2020.5360.006
Rv3014c.2222y7j_B49_B_1294PDBCREDO0.5580.2340.5360.006
Rv3014c.2313k5v_STI_A_2PDBCREDO0.5500.2430.5350.006
Rv3014c.221hwi_115_D_3PDBCREDO0.5870.1950.5350.006
Rv3014c.2313b0w_DGX_B_1PDBCREDO0.5490.2450.5340.006
Rv3014c.223tkd_CYZ_B_267PDBCREDO0.5500.2440.5330.007
Rv3014c.2313pyy_STI_A_3PDBCREDO0.5800.2040.5330.007
Rv3014c.2163o1c_ADN_A_127PDBCREDO0.5530.2400.5330.007
Rv3014c.261hwk_117_B_1PDBCREDO0.6280.1470.5320.007
Rv3014c.221uwj_BAX_A_1723PDBCREDO0.5970.1820.5320.007
Rv3014c.223tne_RIT_A_401PDBCREDO0.5810.2020.5300.007
Rv3014c.2313ms9_STI_A_1PDBCREDO0.5770.2080.5300.007
Rv3014c.2313gp0_NIL_A_1PDBCREDO0.5900.1910.5300.007
Rv3014c.264asd_BAX_A_1500PDBCREDO0.6620.1130.5290.007
Rv3014c.2311iep_STI_B_202PDBCREDO0.5760.2090.5290.007
Rv3014c.2313ms9_STI_B_1PDBCREDO0.5760.2090.5290.007
Rv3014c.263spk_TPV_B_100PDBCREDO0.6420.1320.5290.007
Rv3014c.2313cs9_NIL_A_600PDBCREDO0.5290.2750.5290.007
Rv3014c.221uwj_BAX_B_1723PDBCREDO0.5450.2520.5290.007
Rv3014c.263bjw_SVR_H_504PDBCREDO0.5570.2340.5280.007
Rv3014c.2161z9y_FUN_A_500PDBCREDO0.5490.2460.5280.007
Rv3014c.221hwi_115_A_2PDBCREDO0.6380.1360.5280.007
Rv3014c.2313mss_STI_A_1PDBCREDO0.5750.2110.5280.007
Rv3014c.2223r9c_ECL_A_452PDBCREDO0.5970.1830.5280.007
Rv3014c.2313oez_STI_A_601PDBCREDO0.5740.2110.5280.007
Rv3014c.2311uwh_BAX_A_1723PDBCREDO0.6460.1280.5270.007
Rv3014c.2313mss_STI_C_1PDBCREDO0.5740.2120.5270.007
Rv3014c.2313mss_STI_D_1PDBCREDO0.5740.2120.5270.007
Rv3014c.263heg_BAX_A_1PDBCREDO0.6800.0970.5270.007
Rv3014c.2311iep_STI_A_201PDBCREDO0.5730.2120.5270.007
Rv3014c.2312hyy_STI_D_600PDBCREDO0.5730.2120.5270.007
Rv3014c.2313mss_STI_B_1PDBCREDO0.5730.2120.5270.007
Rv3014c.2161d4f_ADN_B_602PDBCREDO0.5270.2770.5270.007
Rv3014c.2313tne_RIT_A_401PDBCREDO0.6870.0910.5270.007
Rv3014c.2163qgz_ADN_A_127PDBCREDO0.5460.2490.5270.007
Rv3014c.2222ity_IRE_A_2020PDBCREDO0.5260.2780.5260.007
Rv3014c.2311uwh_BAX_B_1723PDBCREDO0.6450.1300.5260.007
Rv3014c.2312hyy_STI_A_600PDBCREDO0.5730.2130.5260.007
Rv3014c.2161d4f_ADN_D_604PDBCREDO0.5260.2780.5260.007
Rv3014c.263bjw_SVR_F_502PDBCREDO0.5540.2380.5260.007
Rv3014c.221uwh_BAX_A_1723PDBCREDO0.5420.2550.5260.007
Rv3014c.2313k5v_STI_B_2PDBCREDO0.5720.2140.5260.007
Rv3014c.2313pyy_STI_B_4PDBCREDO0.5720.2140.5260.007
Rv3014c.221uwh_BAX_B_1723PDBCREDO0.5420.2560.5260.007
Rv3014c.2312hyy_STI_C_600PDBCREDO0.5720.2140.5250.007
Rv3014c.2313gvu_STI_A_1001PDBCREDO0.5710.2160.5240.008
Rv3014c.2313nxu_RIT_B_600PDBCREDO0.5390.2600.5240.008
Rv3014c.2162fum_MIX_B_1539PDBCREDO0.6120.1650.5240.008
Rv3014c.2312qxs_RAL_A_600PDBCREDO0.5380.2610.5230.008
Rv3014c.2221d4f_ADN_A_601PDBCREDO0.5230.2830.5230.008
Rv3014c.2161s9p_DES_B_459PDBCREDO0.5870.1950.5230.008
Rv3014c.2223g5d_1N1_B_1PDBCREDO0.5440.2530.5230.008
Rv3014c.2312qxs_RAL_B_600PDBCREDO0.5370.2630.5220.008
Rv3014c.2313nxu_RIT_A_600PDBCREDO0.5360.2640.5220.008
Rv3014c.223tne_RIT_B_401PDBCREDO0.5720.2140.5210.008
Rv3014c.223q70_RIT_A_2001PDBCREDO0.5210.2860.5210.008
Rv3014c.2222zva_1N1_A_513PDBCREDO0.5210.2860.5210.008
Rv3014c.2162uxo_TAC_B_1211PDBCREDO0.6080.1690.5210.008
Rv3014c.2163kw2_ADN_B_300PDBCREDO0.5840.1980.5210.008
Rv3014c.2223qlg_1N1_A_601PDBCREDO0.5410.2560.5200.008
Rv3014c.262q64_1UN_B_1001PDBCREDO0.5910.1900.5200.008
Rv3014c.2313cs9_NIL_D_600PDBCREDO0.5640.2250.5200.008
Rv3014c.262qak_1UN_A_1001PDBCREDO0.5890.1920.5190.008
Rv3014c.2221ie4_T44_A_128PDBCREDO0.5620.2270.5180.008
Rv3014c.263el9_DR7_A_100PDBCREDO0.5320.2700.5180.008
Rv3014c.263ufn_ROC_A_401PDBCREDO0.5320.2700.5180.008
Rv3014c.261c6y_MK1_B_524PDBCREDO0.5320.2700.5180.008
Rv3014c.223tkd_CYZ_A_266PDBCREDO0.5670.2200.5170.008
Rv3014c.2223qlg_1N1_B_601PDBCREDO0.5380.2610.5170.008
Rv3014c.262q63_1UN_A_1001PDBCREDO0.5880.1940.5170.008
Rv3014c.2313cs9_NIL_C_600PDBCREDO0.5610.2290.5170.008
Rv3014c.2312xkw_P1B_A_1478PDBCREDO0.6060.1720.5170.008
Rv3014c.2161g50_EST_A_600PDBCREDO0.6030.1750.5160.008
Rv3014c.2163r9c_ECL_A_452PDBCREDO0.6550.1190.5160.008
Rv3014c.262pyn_1UN_A_1001PDBCREDO0.5870.1950.5160.009
Rv3014c.261opj_STI_A_3PDBCREDO0.5590.2310.5160.009
Rv3014c.261opj_STI_B_4PDBCREDO0.5590.2310.5160.009
Rv3014c.262pym_1UN_A_1001PDBCREDO0.5860.1960.5160.009
Rv3014c.2161s9p_DES_A_459PDBCREDO0.5750.2100.5160.009
Rv3014c.221sa1_POD_D_701PDBCREDO0.5160.2940.5160.009
Rv3014c.2313tne_RIT_B_401PDBCREDO0.6720.1040.5150.009
Rv3014c.2161s9p_DES_C_500PDBCREDO0.5780.2060.5150.009
Rv3014c.2163ols_EST_A_600PDBCREDO0.6020.1770.5150.009
Rv3014c.261c6z_ROC_B_505PDBCREDO0.5850.1970.5150.009
Rv3014c.2161ki3_PE2_A_1PDBCREDO0.5770.2070.5140.009
Rv3014c.2313cs9_NIL_B_600PDBCREDO0.5290.2750.5140.009
Rv3014c.221uob_PNN_A_1311PDBCREDO0.5140.2970.5140.009
Rv3014c.2162gqg_1N1_A_501PDBCREDO0.5530.2400.5140.009
Rv3014c.2163ols_EST_B_600PDBCREDO0.6000.1790.5140.009
Rv3014c.263ogq_AB1_A_200PDBCREDO0.5550.2370.5130.009
Rv3014c.2162yja_EST_B_1550PDBCREDO0.5990.1800.5130.009
Rv3014c.261uob_PNN_A_1311PDBCREDO0.6610.1140.5130.009
Rv3014c.2313d91_REM_A_350PDBCREDO0.5910.1900.5130.009
Rv3014c.2163uud_EST_A_600PDBCREDO0.5980.1810.5120.009
Rv3014c.2222itz_IRE_A_2021PDBCREDO0.5330.2680.5120.009
Rv3014c.2223g5d_1N1_A_1PDBCREDO0.5330.2690.5120.009
Rv3014c.221sa1_POD_B_700PDBCREDO0.5270.2770.5120.009
Rv3014c.2163uud_EST_B_600PDBCREDO0.5980.1820.5120.009
Rv3014c.2162xkw_P1B_B_1475PDBCREDO0.5500.2440.5110.009
Rv3014c.2311hwk_117_B_1PDBCREDO0.5550.2370.5100.009
Rv3014c.2221kij_NOV_B_444PDBCREDO0.5510.2420.5100.009
Rv3014c.2312hyy_STI_B_600PDBCREDO0.6050.1730.5090.010
Rv3014c.2313el9_DR7_A_100PDBCREDO0.5370.2630.5080.010
Rv3014c.2311uob_PNN_A_1311PDBCREDO0.6040.1740.5080.010
Rv3014c.2162ito_IRE_A_2020PDBCREDO0.5270.2770.5070.010
Rv3014c.2163lfa_1N1_A_361PDBCREDO0.6440.1310.5070.010
Rv3014c.261n49_RIT_B_301PDBCREDO0.5490.2450.5070.010
Rv3014c.2313d91_REM_B_350PDBCREDO0.5840.1990.5060.010
Rv3014c.2164dta_ADN_A_401PDBCREDO0.7300.0590.5050.010
Rv3014c.2161a4l_DCF_A_353PDBCREDO0.5430.2540.5050.010
Rv3014c.2161a4l_DCF_C_1353PDBCREDO0.5430.2540.5050.010
Rv3014c.221lhv_NOG_A_301PDBCREDO0.5710.2160.5040.010
Rv3014c.2161a4l_DCF_B_853PDBCREDO0.5420.2550.5040.010
Rv3014c.2161a4l_DCF_D_1853PDBCREDO0.5420.2550.5040.010
Rv3014c.263oez_STI_A_601PDBCREDO0.5940.1860.5040.010
Rv3014c.2223oht_1N1_A_1000PDBCREDO0.5650.2240.5030.010
Rv3014c.261n49_RIT_D_401PDBCREDO0.5930.1880.5020.011
Rv3014c.261uwj_BAX_B_1723PDBCREDO0.6290.1460.5020.011
Rv3014c.2221sn5_T3_C_601PDBCREDO0.5670.2200.5020.011
Rv3014c.2161d4f_ADN_A_601PDBCREDO0.5630.2260.5020.011
Rv3014c.2163oct_1N1_A_663PDBCREDO0.5790.2060.5010.011
Rv3014c.2313tkd_CYZ_B_267PDBCREDO0.6140.1630.5010.011
Rv3014c.261sa1_POD_B_700PDBCREDO0.6260.1490.5010.011
Rv3014c.2313pww_ROC_A_1001PDBCREDO0.5430.2540.5010.011
Rv3014c.2312vn1_FK5_A_501PDBCREDO0.5000.3180.5000.011
Rv3014c.2313bjw_SVR_B_501PDBCREDO0.5720.2150.5000.011
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
NAD+PubChem0.997663.425
adenosine monophosphatePubChem0.996347.221
nicotinamide nucleotidePubChem0.989335.227
alpha-NMNPubChem0.9335.227
glycerolPubChem0.892.0938
sulfatePubChem0.79896.0626
hydron sulfatePubChem0.798196.157
phosphatePubChem0.79396.9872
N-substituted tetracyclic indolePubChem0.793418.637
3B9PubChem0.787428.486
zincPubChem0.73665.409
uracilPubChem0.729112.087
Na(+)PubChem0.71222.9898
hydron diphosphatePubChem0.7391.981