Tuberculist information
Gene namelpdA
Protein functionNAD(P)H quinone reductase LpdA
Functional category(tuberculist)intermediary metabolism and respiration
Gene location(kb)3689.46
Molecular mass(da)51456.9
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 493
	  		  	1    VVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGL   60
			  	61   RTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELI  120
			  	121  DSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDA  180
			  	181  LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRL  240
			  	241  FKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLT  300
			  	301  VDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRP  360
			  	361  EIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVA  420
			  	421  PIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMAHDDLDCTAAQDAAE  480
			  	481  QLALVPHHLPTSN
			  			

Known structures in the PDB
PDB ID1XDI
Total residue count998
Number of chains2
MethodX-RAY
Resolution2.81
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Pyr_redox_2PF079924-322
Pyr_redoxPF00070184-264
Pyr_redox_dimPF02852352-461
Mtb Structural Proteome models
Model Number1
Model nameRv3303c_1xdi_A
Template1XDI    APDBCREDO
Template coverage2_466
Template Identity(%)100.0
Model coverage(%)94.1
Normalized DOPE score-0.827

Model Number2
Model nameRv3303c
Template1XDI    APDBCREDO
Template coverage2_466
Template Identity(%)100.0
Model coverage(%)94.1
Normalized DOPE score-0.629

Structure Models from Chopin
Model Number1
Profilec.3.1.5, d.87.1.1
Click for model details
zscore67.03
Residue begin1
Residue end493
Model Number2
Profilec.3.1.5
Click for model details
zscore13.99
Residue begin146
Residue end307
Model Number3
Profiled.87.1.1
Click for model details
zscore12.56
Residue begin352
Residue end461
Model Number4
Profiled.87.1.1
Click for model details
zscore10.66
Residue begin292
Residue end482
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv3303cGene nameConfidence Score
Rv2215dlaT0.987
Rv2215dlaT0.987
Rv2215dlaT0.987
Rv2496cbkdB0.986
Rv2496cbkdB0.986
Rv2495cbkdC0.985
Rv2495cbkdC0.985
Rv2495cbkdC0.985
Rv2497cbkdA0.976
Rv0843Rv08430.946
Rv1832gcvB0.935
Rv1832gcvB0.935
Rv2241aceE0.931
Rv2211cgcvT0.922
Rv2211cgcvT0.922
Potential ligand/drug binding sites
Protein ModelPocket NumberDrug Binding Site PMIN ScorePvalue PMINPMAX ScorePvalue PMAX
Rv3303c_1xdi_A31c6y_MK1_B_524PDBCREDO0.7040.0780.6860.000
Rv3303c_1xdi_A31n49_RIT_B_301PDBCREDO0.7110.0730.6550.001
Rv3303c_1xdi_A33ekq_ROC_A_100PDBCREDO0.6790.0980.6430.001
Rv3303c_1xdi_A32q64_1UN_B_1001PDBCREDO0.7250.0630.6380.001
Rv3303c_1xdi_A33el9_DR7_A_100PDBCREDO0.6540.1210.6360.001
Rv3303c_1xdi_A32qak_1UN_A_1001PDBCREDO0.7240.0640.6360.001
Rv3303c_1xdi_A32pyn_1UN_A_1001PDBCREDO0.7220.0650.6350.001
Rv3303c_1xdi_A31c6z_ROC_B_505PDBCREDO0.7220.0650.6350.001
Rv3303c_1xdi_A32pym_1UN_A_1001PDBCREDO0.7210.0660.6340.001
Rv3303c_1xdi_A32q63_1UN_A_1001PDBCREDO0.7190.0670.6320.001
Rv3303c_1xdi_A33ggu_017_B_201PDBCREDO0.6580.1170.6240.001
Rv3303c_1xdi_A33ufn_ROC_A_401PDBCREDO0.6380.1360.6220.001
Rv3303c_1xdi_A31n49_RIT_D_401PDBCREDO0.7330.0580.6210.001
Rv3303c_1xdi_A33spk_TPV_B_100PDBCREDO0.7520.0470.6190.001
Rv3303c_1xdi_A63tne_RIT_A_401PDBCREDO0.6520.1220.6120.002
Rv3303c_1xdi_A33lzv_017_A_200PDBCREDO0.6780.0990.6080.002
Rv3303c_1xdi_A31rl8_RIT_A_9001PDBCREDO0.7080.0750.6070.002
Rv3303c_1xdi_A31hsh_MK1_A_401PDBCREDO0.6230.1520.6070.002
Rv3303c_1xdi_A31hsh_MK1_C_402PDBCREDO0.6230.1530.6060.002
Rv3303c_1xdi_A33el0_1UN_A_201PDBCREDO0.6760.1000.6060.002
Rv3303c_1xdi_A61lhv_NOG_A_301PDBCREDO0.6230.1520.6040.002
Rv3303c_1xdi_A31sh9_RIT_B_301PDBCREDO0.6160.1600.6000.002
Rv3303c_1xdi_A33ogq_AB1_A_200PDBCREDO0.6480.1270.5990.002
Rv3303c_1xdi_A33el5_1UN_B_201PDBCREDO0.6610.1140.5960.002
Rv3303c_1xdi_A31k6c_MK1_B_902PDBCREDO0.7450.0510.5950.002
Rv3303c_1xdi_A31t7i_017_A_200PDBCREDO0.7440.0510.5940.002
Rv3303c_1xdi_A31ohr_1UN_A_201PDBCREDO0.6100.1670.5940.002
Rv3303c_1xdi_A33so9_017_A_100PDBCREDO0.7880.0290.5930.002
Rv3303c_1xdi_A31hxw_RIT_B_301PDBCREDO0.6240.1520.5920.002
Rv3303c_1xdi_A31t7j_478_A_200PDBCREDO0.7830.0310.5890.003
Rv3303c_1xdi_A33el4_ROC_A_100PDBCREDO0.7380.0550.5890.003
Rv3303c_1xdi_A31hxb_ROC_A_100PDBCREDO0.6700.1060.5890.003
Rv3303c_1xdi_A32f80_017_B_301PDBCREDO0.6700.1060.5890.003
Rv3303c_1xdi_A33sm2_478_A_126PDBCREDO0.6510.1240.5870.003
Rv3303c_1xdi_A63tne_RIT_B_401PDBCREDO0.6240.1510.5850.003
Rv3303c_1xdi_A31xkk_FMM_A_91PDBCREDO0.6160.1600.5850.003
Rv3303c_1xdi_A33s56_ROC_A_201PDBCREDO0.5950.1860.5790.003
Rv3303c_1xdi_A31t46_STI_A_3PDBCREDO0.5790.2060.5790.003
Rv3303c_1xdi_A31sgu_MK1_B_2632PDBCREDO0.6800.0970.5760.003
Rv3303c_1xdi_A32fxd_DR7_A_102PDBCREDO0.5890.1930.5730.003
Rv3303c_1xdi_A33pwr_ROC_A_401PDBCREDO0.6830.0950.5720.003
Rv3303c_1xdi_A33gp0_NIL_A_1PDBCREDO0.5850.1980.5690.004
Rv3303c_1xdi_A63tkd_CYZ_A_266PDBCREDO0.6040.1740.5670.004
Rv3303c_1xdi_A32r5q_1UN_B_900PDBCREDO0.6870.0910.5660.004
Rv3303c_1xdi_A32r5q_1UN_D_900PDBCREDO0.6870.0910.5650.004
Rv3303c_1xdi_A33ekx_1UN_B_201PDBCREDO0.6110.1670.5650.004
Rv3303c_1xdi_A33ogp_017_B_200PDBCREDO0.6650.1100.5640.004
Rv3303c_1xdi_A32nnp_ROC_A_401PDBCREDO0.7040.0780.5620.004
Rv3303c_1xdi_A63d91_REM_B_350PDBCREDO0.6750.1010.5610.004
Rv3303c_1xdi_A63d91_REM_A_350PDBCREDO0.6730.1030.5580.004
Rv3303c_1xdi_A61uwh_BAX_A_1723PDBCREDO0.6300.1450.5560.005
Rv3303c_1xdi_A61uwh_BAX_B_1723PDBCREDO0.6300.1450.5550.005
Rv3303c_1xdi_A63tkd_CYZ_B_267PDBCREDO0.6270.1490.5520.005
Rv3303c_1xdi_A61z2b_VLB_C_800PDBCREDO0.6460.1290.5520.005
Rv3303c_1xdi_A32nnk_ROC_A_401PDBCREDO0.6750.1010.5520.005
Rv3303c_1xdi_A33bvb_017_B_401PDBCREDO0.6570.1170.5500.005
Rv3303c_1xdi_A31hsg_MK1_B_902PDBCREDO0.5650.2230.5500.005
Rv3303c_1xdi_A33ndt_ROC_D_100PDBCREDO0.6700.1050.5480.005
Rv3303c_1xdi_A32bpx_MK1_B_902PDBCREDO0.6100.1670.5470.005
Rv3303c_1xdi_A33t3c_017_A_201PDBCREDO0.5760.2090.5460.005
Rv3303c_1xdi_A33nu6_478_B_401PDBCREDO0.5750.2100.5450.005
Rv3303c_1xdi_A31sdv_MK1_B_902PDBCREDO0.5440.2520.5440.005
Rv3303c_1xdi_A33ogp_017_A_200PDBCREDO0.7010.0800.5440.005
Rv3303c_1xdi_A33oxv_478_C_200PDBCREDO0.5430.2540.5430.006
Rv3303c_1xdi_A33pww_ROC_A_1001PDBCREDO0.5420.2550.5420.006
Rv3303c_1xdi_A62x9g_LYA_A_1270PDBCREDO0.5580.2320.5410.006
Rv3303c_1xdi_A33nu4_478_B_401PDBCREDO0.5410.2570.5410.006
Rv3303c_1xdi_A34dqb_017_B_101PDBCREDO0.5400.2580.5400.006
Rv3303c_1xdi_A61uwj_BAX_B_1723PDBCREDO0.6480.1260.5380.006
Rv3303c_1xdi_A32qhc_AB1_B_9001PDBCREDO0.6170.1590.5380.006
Rv3303c_1xdi_A33em4_DR7_A_100PDBCREDO0.5520.2420.5370.006
Rv3303c_1xdi_A62x9g_LYA_B_1270PDBCREDO0.5730.2130.5360.006
Rv3303c_1xdi_A34dqc_017_A_101PDBCREDO0.5650.2230.5360.006
Rv3303c_1xdi_A33ucb_017_A_201PDBCREDO0.6550.1190.5360.006
Rv3303c_1xdi_A33s53_017_A_201PDBCREDO0.5800.2040.5340.006
Rv3303c_1xdi_A33nu9_478_A_401PDBCREDO0.5940.1870.5320.007
Rv3303c_1xdi_A33oxw_017_B_200PDBCREDO0.5770.2080.5320.007
Rv3303c_1xdi_A32b60_RIT_B_100PDBCREDO0.5460.2500.5320.007
Rv3303c_1xdi_A32b7z_MK1_B_200PDBCREDO0.6270.1480.5320.007
Rv3303c_1xdi_A34dqh_017_B_101PDBCREDO0.5760.2080.5320.007
Rv3303c_1xdi_A62y6o_1N1_A_1892PDBCREDO0.5490.2450.5310.007
Rv3303c_1xdi_A32q5k_AB1_A_201PDBCREDO0.5610.2290.5310.007
Rv3303c_1xdi_A61lhu_EST_A_301PDBCREDO0.6280.1470.5300.007
Rv3303c_1xdi_A31sa1_POD_B_700PDBCREDO0.6630.1120.5300.007
Rv3303c_1xdi_A61uwj_BAX_A_1723PDBCREDO0.6960.0840.5300.007
Rv3303c_1xdi_A61p93_DEX_D_4999PDBCREDO0.5300.2730.5300.007
Rv3303c_1xdi_A33oxw_017_D_200PDBCREDO0.5750.2110.5300.007
Rv3303c_1xdi_A33k4v_ROC_D_201PDBCREDO0.6790.0980.5290.007
Rv3303c_1xdi_A62aa5_STR_A_301PDBCREDO0.5460.2490.5290.007
Rv3303c_1xdi_A62aa5_STR_B_302PDBCREDO0.5460.2490.5290.007
Rv3303c_1xdi_A33em6_017_A_200PDBCREDO0.5900.1920.5290.007
Rv3303c_1xdi_A33nuo_478_B_478PDBCREDO0.5430.2540.5290.007
Rv3303c_1xdi_A61cil_ETS_A_263PDBCREDO0.5830.2000.5280.007
Rv3303c_1xdi_A62fum_MIX_D_3539PDBCREDO0.5820.2020.5260.007
Rv3303c_1xdi_A62aax_PDN_A_502PDBCREDO0.5430.2540.5260.007
Rv3303c_1xdi_A31hpv_478_B_200PDBCREDO0.5850.1980.5250.007
Rv3303c_1xdi_A33ttp_017_A_201PDBCREDO0.5850.1980.5240.008
Rv3303c_1xdi_A34dqe_017_B_101PDBCREDO0.6010.1780.5240.008
Rv3303c_1xdi_A33tkg_ROC_C_901PDBCREDO0.6880.0900.5240.008
Rv3303c_1xdi_A63mne_DEX_A_784PDBCREDO0.5240.2810.5240.008
Rv3303c_1xdi_A33lzs_017_A_200PDBCREDO0.5840.1990.5240.008
Rv3303c_1xdi_A63q70_RIT_A_2001PDBCREDO0.6120.1650.5230.008
Rv3303c_1xdi_A31sa1_POD_D_701PDBCREDO0.6740.1020.5230.008
Rv3303c_1xdi_A62aax_PDN_B_503PDBCREDO0.5400.2580.5230.008
Rv3303c_1xdi_A33eky_DR7_A_100PDBCREDO0.5510.2430.5230.008
Rv3303c_1xdi_A33d1y_ROC_A_201PDBCREDO0.6090.1680.5230.008
Rv3303c_1xdi_A63gn8_DEX_B_247PDBCREDO0.5220.2840.5220.008
Rv3303c_1xdi_A61m2z_DEX_A_301PDBCREDO0.5220.2850.5220.008
Rv3303c_1xdi_A61p93_DEX_C_3999PDBCREDO0.5210.2850.5210.008
Rv3303c_1xdi_A63gn8_DEX_A_247PDBCREDO0.5210.2850.5210.008
Rv3303c_1xdi_A32qxs_RAL_A_600PDBCREDO0.5500.2440.5210.008
Rv3303c_1xdi_A62aa6_STR_B_402PDBCREDO0.5380.2610.5210.008
Rv3303c_1xdi_A62aa6_STR_A_401PDBCREDO0.5380.2610.5200.008
Rv3303c_1xdi_A32qxs_RAL_B_600PDBCREDO0.5490.2450.5200.008
Rv3303c_1xdi_A33n3i_ROC_A_201PDBCREDO0.5640.2250.5200.008
Rv3303c_1xdi_A32r5p_MK1_B_902PDBCREDO0.5470.2480.5190.008
Rv3303c_1xdi_A61m2z_DEX_D_401PDBCREDO0.5190.2890.5190.008
Rv3303c_1xdi_A63jwq_VIA_D_901PDBCREDO0.5730.2120.5190.008
Rv3303c_1xdi_A33ebz_017_B_201PDBCREDO0.6300.1450.5190.008
Rv3303c_1xdi_A32fxe_DR7_A_102PDBCREDO0.5460.2490.5180.008
Rv3303c_1xdi_A32r5p_MK1_D_902PDBCREDO0.5460.2500.5180.008
Rv3303c_1xdi_A32z54_AB1_A_200PDBCREDO0.6290.1460.5180.008
Rv3303c_1xdi_A61hwi_115_A_2PDBCREDO0.5350.2650.5180.008
Rv3303c_1xdi_A63nrr_D16_B_520PDBCREDO0.5920.1890.5170.008
Rv3303c_1xdi_A33el1_DR7_A_100PDBCREDO0.5590.2320.5170.008
Rv3303c_1xdi_A33oy4_017_B_200PDBCREDO0.6270.1480.5160.008
Rv3303c_1xdi_A31sdu_MK1_B_902PDBCREDO0.5580.2330.5160.009
Rv3303c_1xdi_A62gqg_1N1_B_502PDBCREDO0.5330.2690.5160.009
Rv3303c_1xdi_A63spk_TPV_A_100PDBCREDO0.5510.2430.5160.009
Rv3303c_1xdi_A33ekw_DR7_B_100PDBCREDO0.5560.2350.5150.009
Rv3303c_1xdi_A33em4_DR7_V_100PDBCREDO0.5420.2550.5140.009
Rv3303c_1xdi_A32o4p_TPV_A_300PDBCREDO0.6240.1510.5140.009
Rv3303c_1xdi_A33cyx_ROC_A_201PDBCREDO0.6900.0890.5140.009
Rv3303c_1xdi_A32aof_FRD_C_305PDBCREDO0.6590.1160.5140.009
Rv3303c_1xdi_A61p93_DEX_B_2999PDBCREDO0.5680.2200.5130.009
Rv3303c_1xdi_A63oct_1N1_A_663PDBCREDO0.5870.1940.5130.009
Rv3303c_1xdi_A61fm6_BRL_X_504PDBCREDO0.5300.2730.5130.009
Rv3303c_1xdi_A63frq_ERY_B_195PDBCREDO0.5470.2480.5130.009
Rv3303c_1xdi_A64eyb_0WO_A_303PDBCREDO0.6070.1710.5120.009
Rv3303c_1xdi_A32rkf_AB1_A_501PDBCREDO0.5390.2590.5120.009
Rv3303c_1xdi_A33ndu_ROC_D_100PDBCREDO0.6860.0920.5110.009
Rv3303c_1xdi_A62x9g_LYA_C_1270PDBCREDO0.5840.1980.5110.009
Rv3303c_1xdi_A63bbt_FMM_D_91PDBCREDO0.5650.2240.5110.009
Rv3303c_1xdi_A61p93_DEX_A_1999PDBCREDO0.5640.2250.5100.009
Rv3303c_1xdi_A61zgy_BRL_A_503PDBCREDO0.5450.2520.5100.009
Rv3303c_1xdi_A62h42_VIA_A_901PDBCREDO0.5600.2300.5070.010
Rv3303c_1xdi_A33em3_478_B_200PDBCREDO0.5480.2470.5070.010
Rv3303c_1xdi_A62x9g_LYA_D_1270PDBCREDO0.5800.2040.5070.010
Rv3303c_1xdi_A33q70_RIT_A_2001PDBCREDO0.6520.1230.5060.010
Rv3303c_1xdi_A32o4n_TPV_A_300PDBCREDO0.6710.1040.5050.010
Rv3303c_1xdi_A62ab2_SNL_B_503PDBCREDO0.5380.2610.5040.010
Rv3303c_1xdi_A34dqf_017_B_101PDBCREDO0.5450.2510.5040.010
Rv3303c_1xdi_A62ab2_SNL_A_502PDBCREDO0.5370.2620.5040.010
Rv3303c_1xdi_A63apw_DP0_A_190PDBCREDO0.5200.2880.5030.010
Rv3303c_1xdi_A32aoi_FRD_C_305PDBCREDO0.5720.2150.5030.010
Rv3303c_1xdi_A33prs_RIT_A_1001PDBCREDO0.5860.1970.5030.010
Rv3303c_1xdi_A33ekv_478_A_200PDBCREDO0.5430.2540.5020.011
Rv3303c_1xdi_A62oax_SNL_C_3001PDBCREDO0.5350.2650.5020.011
Rv3303c_1xdi_A63k54_1N1_A_1PDBCREDO0.6390.1350.5020.011
Rv3303c_1xdi_A61uob_PNN_A_1311PDBCREDO0.5860.1960.5020.011
Rv3303c_1xdi_A62nni_MTK_A_501PDBCREDO0.6220.1540.5010.011
Rv3303c_1xdi_A63ln1_CEL_B_682PDBCREDO0.5010.3170.5010.011
Rv3303c_1xdi_A61hwi_115_D_3PDBCREDO0.5340.2670.5000.011
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
flavin adenine dinucleotidePubChem0.989785.55
lipoamidePubChem0.96205.341
NAD+PubChem0.944663.425
H(+)PubChem0.9272.01588
deuteriumPubChem0.9252.01588
dihydrolipoamidePubChem0.916207.357
reduced nicotinamide adenine dinucleotidePubChem0.907665.441
acetyl-CoAPubChem0.905809.571
coenzyme APubChem0.901767.534
protiumPubChem0.92.01576
pyruvic acidPubChem0.988.0621
acetyl coenzyme-APubChem0.9809.571
dihydronicotinamide formycin dinucleotidePubChem0.9665.441
LPMPubChem0.9207.357
DL-lipoamidePubChem0.9205.341
carbon dioxidePubChem0.944.0095
Co-APubChem0.9767.534