SInCRe - Rv0511

Tuberculist information

Gene name	hemD
Protein function	Probable uroporphyrin-III C-methyltransferase HemD (uroporphyrinogen III methylase) (urogen III methylase) (SUMT) (urogen III methylase) (UROM)
Functional category(tuberculist)	intermediary metabolism and respiration
Gene location(kb)	602.819
Molecular mass(da)	58835.6
External sites	TB Database TubercuList WebTB

Protein sequence

Number of amino acids : 565

	  		  	1    MTRGRKPRPGRIVFVGSGPGDPGLLTTRAAAVLANAALVFTDPDVPEPVVALIGTDLPPV   60
			  	61   SGPAPAEPVAGNGDAAGGGSAQEHGRAASAVVSGGPDIRPALGDPADVAKTLTAEARSGV  120
			  	121  DVVRLVAGDPLTVDAVISEVNAVARTHLHIEIVPGLAASSAVPTYAGLPLGSSHTVADVR  180
			  	181  IDPENTDWDALAAAPGPLILQATASHLAESARSLIDHQLAESTPCVVTAHGTTCQQRSVE  240
			  	241  TTLQGLTDPAVLGATDPACSANGRDSQAGPLIVTIGKTVTSRAKLNWWESRALYGWTVLV  300
			  	301  PRTKDQAGEMSERLTSYGALPVEVPTIAVEPPRSPAQMERAVKGLVDGRFQWIVFTSTNA  360
			  	361  VRAVWEKFGEFGLDARAFSGVKIACVGESTADRVRAFGISPELVPSGEQSSLGLLDDFPP  420
			  	421  YDSVFDPVNRVLLPRADIATETLAEGLRERGWEIEDVTAYRTVRAAPPPATTREMIKTGG  480
			  	481  FDAVCFTSSSTVRNLVGIAGKPHARTIIACIGPKTAETAAEFGLRVDVQPDTAAIGPLVD  540
			  	541  ALAEHAARLRAEGALPPPRKKSRRR

Known structures in the PDB

No Known structures

Number of amino acids : 565

Domains assigned based on sequence.

Mtb Structural proteome models

CHOPIN models

Profile-based domain assignment

Structural/Functional domain family	Pfam acc.no./SCOP ID	Domain Region
TP_methylase	PF00590	11-247
HEM4	PF02602	308-540

Mtb Structural Proteome models

Model Number	1
Model name	Rv0511.3
Template	1WCW APDB CREDO
Template coverage	10_258
Template Identity(%)	20.9
Model coverage(%)	44.4
Normalized DOPE score	-0.644

Model Number	2
Model name	Rv0511
Template	1S4D APDB CREDO
Template coverage	6_268
Template Identity(%)	26.0
Model coverage(%)	52.6
Normalized DOPE score	-0.009

Structure Models from Chopin

Model Number	1
Profile	c.113.1.1 Click for model details
zscore	35.59
Residue begin	308
Residue end	540

Model Number	2
Profile	3.30.950.10, 3.40.1010.10 Click for model details
zscore	20.91
Residue begin	4
Residue end	294

Model Number	3
Profile	c.90.1.1 Click for model details
zscore	19.82
Residue begin	1
Residue end	321

Model Number	4
Profile	3.30.950.10 Click for model details
zscore	16.34
Residue begin	154
Residue end	294

Model Number	5
Profile	3.40.1010.10 Click for model details
zscore	10.68
Residue begin	5
Residue end	158

Model Number	6
Profile	3.40.50.10090 Click for model details
zscore	10.06
Residue begin	295
Residue end	423

Binding pockets

STRING

Cytoscape Web will replace the contents of this div with protein-protein interaction network.

Protein interacting with Rv0511	Gene name	Confidence Score
Rv0510	hemC	0.998
Rv0510	hemC	0.998
Rv0509	hemA	0.995
Rv0509	hemA	0.995
Rv0509	hemA	0.995
Rv0524	hemL	0.981
Rv2678c	hemE	0.969
Rv2847c	cysG	0.951
Rv2847c	cysG	0.951
Rv0512	hemB	0.949
Rv2066	cobI	0.94
Rv2677c	hemY	0.904
Rv2677c	hemY	0.904

Potential ligand/drug binding sites

No binding sites identified

Similarity to known drug target from sensitive sequence analysis

No drug targets

List of small molecules tested from TIBLE

Data not available

Off-target activity - ligand based from TIBLE

Data not available

Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.

Data not available

STITCH interactions

Chemical Name	Confidence score	Molecular Weight
precorrin-2PubChem	0.9	857.792
hydroxymethylbilanePubChem	0.9	854.81
S-adenosyl-L-methioninePubChem	0.9	399.445
H(+)PubChem	0.9	2.01588
dihydrosirohydrochlorinPubChem	0.9	864.848
S-adenosyl-methioninePubChem	0.9	398.437
CHEBI:111705PubChem	0.9	846.746
deuteriumPubChem	0.9	2.01588
hydroxyl radicalsPubChem	0.9	17.0073
uroporphyrinogen IIIPubChem	0.9	836.795
protiumPubChem	0.9	2.01576
precorrin-1PubChem	0.9	850.821
S-adenosylhomocysteinePubChem	0.9	384.411