Gene name | dapF |
Protein function | Probable diaminopimelate epimerase DapF (DAP epimerase) |
Functional category(tuberculist) | intermediary metabolism and respiration |
Gene location(kb) | 3038.93 |
Molecular mass(da) | 29697.6 |
External sites | TB Database TubercuList WebTB |
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1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG
PDB ID | 3FVE | |
---|---|---|
Total residue count | 290 | |
Number of chains | 1 | |
Method | X-RAY | |
Resolution | 2.6 |
Structural/Functional domain family | Pfam acc.no./SCOP ID | Domain Region | |
---|---|---|---|
DAP_epimerase | PF01678 | 3-142 | |
DAP_epimerase | PF01678 | 157-275 |
Model Number | 1 |
Profile | d.21.1.1 Click for model details |
---|---|
zscore | 16.97 |
Residue begin | 137 |
Residue end | 284 |
Protein interacting with Rv2726c | Gene name | Confidence Score |
---|---|---|
Rv1293 | lysA | 0.999 |
Rv1293 | lysA | 0.999 |
Rv1202 | dapE | 0.996 |
Rv1202 | dapE | 0.996 |
Rv2773c | dapB | 0.996 |
Rv2773c | dapB | 0.996 |
Rv2753c | dapA | 0.994 |
Rv2158c | murE | 0.991 |
Rv2158c | murE | 0.991 |
Rv2158c | murE | 0.991 |
Rv3708c | asd | 0.969 |
Rv3708c | asd | 0.969 |
Rv3709c | ask | 0.953 |
Rv3709c | ask | 0.953 |
Rv3709c | ask | 0.953 |
Rv1178 | Rv1178 | 0.935 |
Rv2727c | miaA | 0.926 |
Chemical Name | Confidence score | Molecular Weight |
---|---|---|
diaminopimelic acidPubChem | 0.989 | 190.197 |
ll-2,6-diaminopimelic acidPubChem | 0.982 | 190.197 |
L-lysinePubChem | 0.974 | 146.188 |
glycerolPubChem | 0.965 | 92.0938 |
meso-diaminopimelatePubChem | 0.957 | 190.197 |
succinatePubChem | 0.927 | 118.088 |
carbon dioxidePubChem | 0.917 | 44.0095 |
hydroxyl radicalsPubChem | 0.905 | 17.0073 |
dithiothreitolPubChem | 0.9 | 154.251 |
threo-1,4-dimercapto-2,3-butanediolPubChem | 0.9 | 154.251 |
L-2,3,4,5-tetrahydrodipicolinatePubChem | 0.9 | 171.151 |
protiumPubChem | 0.9 | 2.01576 |
H(+)PubChem | 0.9 | 2.01588 |
L,L-SDAPPubChem | 0.9 | 290.27 |
delta1-piperideine-2,6-dicarboxylatePubChem | 0.9 | 171.151 |
deuteriumPubChem | 0.9 | 2.01588 |
C04421PubChem | 0.9 | 290.27 |
alpha-ketoglutaratePubChem | 0.9 | 146.098 |
poly-L-lysine hydrobromidePubChem | 0.9 | 146.188 |
glutamatePubChem | 0.9 | 147.129 |