Tuberculist information
Gene namerelA
Protein functionProbable GTP pyrophosphokinase RelA (ATP:GTP 3'- pyrophosphotransferase) (PPGPP synthetase I) ((P)PPGPP synthetase) (GTP diphosphokinase)
Functional category(tuberculist)intermediary metabolism and respiration
Gene location(kb)2907.83
Molecular mass(da)87321.8
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 790
	  		  	1    VAEDQLTAQAVAPPTEASAALEPALETPESPVETLKTSISASRRVRARLARRMTAQRSTT   60
			  	61   NPVLEPLVAVHREIYPKADLSILQRAYEVADQRHASQLRQSGDPYITHPLAVANILAELG  120
			  	121  MDTTTLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRVVLGSAAEGETIRKM  180
			  	181  ITAMARDPRVLVIKVADRLHNMRTMRFLPPEKQARKARETLEVIAPLAHRLGMASVKWEL  240
			  	241  EDLSFAILHPKKYEEIVRLVAGRAPSRDTYLAKVRAEIVNTLTASKIKATVEGRPKHYWS  300
			  	301  IYQKMIVKGRDFDDIHDLVGVRILCDEIRDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGV  360
			  	361  YQSLHTTVVGPEGKPLEVQIRTRDMHRTAEYGIAAHWRYKEAKGRNGVLHPHAAAEIDDM  420
			  	421  AWMRQLLDWQREAADPGEFLESLRYDLAVQEIFVFTPKGDVITLPTGSTPVDFAYAVHTE  480
			  	481  VGHRCIGARVNGRLVALERKLENGEVVEVFTSKAPNAGPSRDWQQFVVSPRAKTKIRQWF  540
			  	541  AKERREEALETGKDAMAREVRRGGLPLQRLVNGESMAAVARELHYADVSALYTAIGEGHV  600
			  	601  SAKHVVQRLLAELGGIDQAEEELAERSTPATMPRRPRSTDDVGVSVPGAPGVLTKLAKCC  660
			  	661  TPVPGDVIMGFVTRGGGVSVHRTDCTNAASLQQQAERIIEVLWAPSPSSVFLVAIQVEAL  720
			  	721  DRHRLLSDVTRALADEKVNILSASVTTSGDRVAISRFTFEMGDPKHLGHLLNAVRNVEGV  780
			  	781  YDVYRVTSAA
			  			

Known structures in the PDB
No Known structures
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
HD_4PF1332886-234
RelA_SpoTPF04607293-404
TGSPF02824452-511
ACT_4PF13291707-785
Mtb Structural Proteome models
Model Number1
Model nameRv2583c.5
Template2FGC    APDBCREDO
Template coverage30_101
Template Identity(%)15.3
Model coverage(%)9.0
Normalized DOPE score-1.226

Model Number2
Model nameRv2583c.6
Template2F1F    APDBCREDO
Template coverage5_80
Template Identity(%)21.1
Model coverage(%)9.5
Normalized DOPE score-0.786

Model Number3
Model nameRv2583c
Template1VJ7    APDBCREDO
Template coverage10_364
Template Identity(%)48.1
Model coverage(%)42.0
Normalized DOPE score-0.646

Model Number4
Model nameRv2583c.3
Template1WWT    APDBCREDO
Template coverage8_87
Template Identity(%)21.2
Model coverage(%)10.6
Normalized DOPE score0.092

Model Number5
Model nameRv2583c.2
Template2BE3    APDBCREDO
Template coverage4_202
Template Identity(%)21.1
Model coverage(%)23.9
Normalized DOPE score0.295

Model Number6
Model nameRv2583c.4
Template1TKE    APDBCREDO
Template coverage4_218
Template Identity(%)16.3
Model coverage(%)30.0
Normalized DOPE score0.403

Structure Models from Chopin
Model Number1
Profiled.218.1.8
Click for model details
zscore20.66
Residue begin250
Residue end438
Model Number2
Profiled.15.10.2
Click for model details
zscore14.5
Residue begin451
Residue end515
Model Number3
Profiled.58.18.12
Click for model details
zscore12.27
Residue begin712
Residue end784
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv2583cGene nameConfidence Score
Rv0667rpoB0.987
Rv0667rpoB0.987
Rv3457crpoA0.987
Rv3457crpoA0.987
Rv0667rpoB0.987
Rv3457crpoA0.987
Rv0667rpoB0.987
Rv0667rpoB0.987
Rv0667rpoB0.987
Rv2584capt0.986
Rv0668rpoC0.959
Rv0668rpoC0.959
Rv0668rpoC0.959
Rv0668rpoC0.959
Rv0668rpoC0.959
Rv1617pykA0.956
Rv1617pykA0.956
Rv2445cndkA0.954
Rv1021Rv10210.952
Rv1026Rv10260.946
Rv0496Rv04960.928
Rv1897cRv1897c0.901
Potential ligand/drug binding sites
Protein ModelPocket NumberDrug Binding Site PMIN ScorePvalue PMINPMAX ScorePvalue PMAX
Rv2583c.311xkk_FMM_A_91PDBCREDO0.6620.1130.6450.001
Rv2583c.311t46_STI_A_3PDBCREDO0.6590.1150.6420.001
Rv2583c.453spk_TPV_B_100PDBCREDO0.6560.1190.6370.001
Rv2583c.313gp0_NIL_A_1PDBCREDO0.6250.1510.6250.001
Rv2583c.454asd_BAX_A_1500PDBCREDO0.6140.1630.6140.002
Rv2583c.551e7b_HLT_B_4003PDBCREDO0.6560.1190.6110.002
Rv2583c.551e7b_HLT_A_4003PDBCREDO0.6530.1210.6080.002
Rv2583c.453gcs_BAX_A_401PDBCREDO0.6040.1740.6040.002
Rv2583c.313cs9_NIL_C_600PDBCREDO0.6200.1560.6040.002
Rv2583c.313cs9_NIL_D_600PDBCREDO0.6170.1590.6010.002
Rv2583c.312qxs_RAL_A_600PDBCREDO0.6420.1330.5920.002
Rv2583c.451t7j_478_A_200PDBCREDO0.6290.1460.5920.002
Rv2583c.312qxs_RAL_B_600PDBCREDO0.6410.1340.5910.002
Rv2583c.451sa1_POD_B_700PDBCREDO0.5900.1910.5900.003
Rv2583c.311uwj_BAX_A_1723PDBCREDO0.6930.0860.5890.003
Rv2583c.312xkw_P1B_A_1478PDBCREDO0.6190.1570.5880.003
Rv2583c.261c6z_ROC_B_505PDBCREDO0.6020.1770.5870.003
Rv2583c.451n49_RIT_D_401PDBCREDO0.6200.1560.5850.003
Rv2583c.453so9_017_A_100PDBCREDO0.6170.1590.5810.003
Rv2583c.453hec_STI_A_1PDBCREDO0.6540.1210.5790.003
Rv2583c.311opj_STI_A_3PDBCREDO0.6430.1310.5780.003
Rv2583c.452y6o_1N1_A_1892PDBCREDO0.6720.1040.5760.003
Rv2583c.313cs9_NIL_B_600PDBCREDO0.6230.1530.5750.003
Rv2583c.453heg_BAX_A_1PDBCREDO0.5900.1910.5730.003
Rv2583c.453spk_TPV_A_100PDBCREDO0.7370.0560.5720.003
Rv2583c.313bjw_SVR_E_503PDBCREDO0.6020.1770.5710.004
Rv2583c.311opj_STI_B_4PDBCREDO0.6350.1400.5700.004
Rv2583c.313cs9_NIL_A_600PDBCREDO0.6340.1400.5700.004
Rv2583c.451sa1_POD_D_701PDBCREDO0.5870.1950.5690.004
Rv2583c.451uwj_BAX_B_1723PDBCREDO0.5690.2180.5690.004
Rv2583c.313sm2_478_A_126PDBCREDO0.6140.1630.5680.004
Rv2583c.451hwk_117_B_1PDBCREDO0.6010.1770.5670.004
Rv2583c.313oez_STI_A_601PDBCREDO0.6810.0960.5620.004
Rv2583c.451uwj_BAX_A_1723PDBCREDO0.6130.1640.5620.004
Rv2583c.451hwk_117_A_2PDBCREDO0.5610.2280.5610.004
Rv2583c.314asd_BAX_A_1500PDBCREDO0.7210.0660.5610.004
Rv2583c.313k5v_STI_A_2PDBCREDO0.6420.1320.5610.004
Rv2583c.451hwk_117_C_4PDBCREDO0.5600.2300.5600.004
Rv2583c.313bjw_SVR_B_501PDBCREDO0.5740.2120.5590.004
Rv2583c.451n49_RIT_B_301PDBCREDO0.6450.1300.5590.004
Rv2583c.261rl8_RIT_A_9001PDBCREDO0.5590.2320.5590.004
Rv2583c.313bjw_SVR_H_504PDBCREDO0.5720.2140.5570.004
Rv2583c.313ufn_ROC_A_401PDBCREDO0.5570.2340.5570.004
Rv2583c.451t46_STI_A_3PDBCREDO0.6970.0830.5570.004
Rv2583c.553re0_CPT_C_201PDBCREDO0.5980.1820.5570.004
Rv2583c.313el9_DR7_A_100PDBCREDO0.5850.1970.5550.005
Rv2583c.451hwl_FBI_B_1PDBCREDO0.5720.2150.5550.005
Rv2583c.451hwl_FBI_D_3PDBCREDO0.5720.2150.5550.005
Rv2583c.261xkk_FMM_A_91PDBCREDO0.6130.1640.5540.005
Rv2583c.313mss_STI_B_1PDBCREDO0.6700.1050.5530.005
Rv2583c.313pyy_STI_A_3PDBCREDO0.6700.1050.5530.005
Rv2583c.453v5w_8PR_A_701PDBCREDO0.6660.1090.5530.005
Rv2583c.313pyy_STI_B_4PDBCREDO0.6700.1060.5530.005
Rv2583c.311iep_STI_B_202PDBCREDO0.6700.1060.5530.005
Rv2583c.313k5v_STI_B_2PDBCREDO0.6690.1060.5520.005
Rv2583c.313gvu_STI_A_1001PDBCREDO0.6680.1070.5520.005
Rv2583c.261t46_STI_A_3PDBCREDO0.6420.1320.5510.005
Rv2583c.311iep_STI_A_201PDBCREDO0.6670.1080.5510.005
Rv2583c.313ms9_STI_A_1PDBCREDO0.6670.1080.5510.005
Rv2583c.313ms9_STI_B_1PDBCREDO0.6670.1080.5510.005
Rv2583c.313mss_STI_A_1PDBCREDO0.6670.1080.5510.005
Rv2583c.313bjw_SVR_F_502PDBCREDO0.5650.2230.5510.005
Rv2583c.312hyy_STI_D_600PDBCREDO0.6670.1080.5510.005
Rv2583c.313mss_STI_C_1PDBCREDO0.6670.1080.5510.005
Rv2583c.451uwh_BAX_A_1723PDBCREDO0.5840.1980.5500.005
Rv2583c.452hyy_STI_B_600PDBCREDO0.5670.2210.5500.005
Rv2583c.453oez_STI_B_601PDBCREDO0.6220.1540.5500.005
Rv2583c.451uwh_BAX_B_1723PDBCREDO0.5840.1990.5500.005
Rv2583c.553re0_CPT_B_201PDBCREDO0.6320.1430.5490.005
Rv2583c.313mss_STI_D_1PDBCREDO0.6650.1100.5490.005
Rv2583c.453gp0_NIL_A_1PDBCREDO0.7050.0770.5490.005
Rv2583c.312hyy_STI_A_600PDBCREDO0.6640.1110.5480.005
Rv2583c.451xkk_FMM_A_91PDBCREDO0.7230.0650.5480.005
Rv2583c.263gp0_NIL_A_1PDBCREDO0.6220.1540.5480.005
Rv2583c.451hwl_FBI_A_2PDBCREDO0.5640.2240.5480.005
Rv2583c.312hyy_STI_C_600PDBCREDO0.6630.1120.5480.005
Rv2583c.453ut5_LOC_B_502PDBCREDO0.5810.2020.5470.005
Rv2583c.313b0w_DGX_B_1PDBCREDO0.6260.1490.5470.005
Rv2583c.451hwl_FBI_C_4PDBCREDO0.5630.2260.5470.005
Rv2583c.311uwj_BAX_B_1723PDBCREDO0.7000.0810.5450.005
Rv2583c.451hwi_115_D_3PDBCREDO0.6150.1610.5440.005
Rv2583c.453oez_STI_A_601PDBCREDO0.5760.2080.5440.006
Rv2583c.451c6y_MK1_B_524PDBCREDO0.6600.1150.5420.006
Rv2583c.313gcs_BAX_A_401PDBCREDO0.6950.0840.5410.006
Rv2583c.311c6z_ROC_B_505PDBCREDO0.5980.1810.5400.006
Rv2583c.451hwk_117_D_3PDBCREDO0.5740.2120.5400.006
Rv2583c.451hwi_115_B_1PDBCREDO0.6100.1670.5400.006
Rv2583c.312hyy_STI_B_600PDBCREDO0.7130.0710.5390.006
Rv2583c.453ut5_LOC_D_502PDBCREDO0.6070.1710.5370.006
Rv2583c.453ekq_ROC_A_100PDBCREDO0.6360.1390.5360.006
Rv2583c.453el0_1UN_A_201PDBCREDO0.5990.1800.5340.006
Rv2583c.312fxd_DR7_A_102PDBCREDO0.5630.2260.5340.006
Rv2583c.312oiq_STI_A_1001PDBCREDO0.7060.0770.5330.007
Rv2583c.453ogp_017_A_200PDBCREDO0.5490.2450.5330.007
Rv2583c.452oiq_STI_A_1001PDBCREDO0.5490.2460.5320.007
Rv2583c.241jlb_NVP_A_999PDBCREDO0.5570.2340.5320.007
Rv2583c.452r5q_1UN_B_900PDBCREDO0.5470.2480.5310.007
Rv2583c.452pl0_STI_A_200PDBCREDO0.5460.2490.5300.007
Rv2583c.452r5q_1UN_D_900PDBCREDO0.5460.2490.5300.007
Rv2583c.313heg_BAX_A_1PDBCREDO0.7010.0800.5300.007
Rv2583c.262nnk_ROC_A_401PDBCREDO0.5560.2360.5300.007
Rv2583c.261k6c_MK1_B_902PDBCREDO0.5690.2180.5290.007
Rv2583c.453el9_DR7_A_100PDBCREDO0.6450.1300.5290.007
Rv2583c.261c6y_MK1_B_524PDBCREDO0.6340.1410.5290.007
Rv2583c.551xr3_ISZ_B_302PDBCREDO0.5290.2740.5290.007
Rv2583c.263prs_RIT_A_1001PDBCREDO0.5290.2740.5290.007
Rv2583c.312q64_1UN_B_1001PDBCREDO0.5840.1980.5280.007
Rv2583c.453lzv_017_A_200PDBCREDO0.5910.1900.5270.007
Rv2583c.453tne_RIT_A_401PDBCREDO0.5950.1850.5260.007
Rv2583c.312pym_1UN_A_1001PDBCREDO0.5820.2020.5250.007
Rv2583c.261hxb_ROC_A_100PDBCREDO0.5380.2610.5250.007
Rv2583c.263el9_DR7_A_100PDBCREDO0.6280.1470.5250.007
Rv2583c.312qak_1UN_A_1001PDBCREDO0.5810.2020.5250.007
Rv2583c.261t7i_017_A_200PDBCREDO0.5640.2250.5250.007
Rv2583c.311uwh_BAX_A_1723PDBCREDO0.7160.0690.5250.007
Rv2583c.262pym_1UN_A_1001PDBCREDO0.5380.2620.5250.007
Rv2583c.453pyy_STI_A_3PDBCREDO0.5560.2360.5240.008
Rv2583c.311uwh_BAX_B_1723PDBCREDO0.7150.0700.5240.008
Rv2583c.263pwr_ROC_A_401PDBCREDO0.5360.2640.5230.008
Rv2583c.453tne_RIT_B_401PDBCREDO0.5910.1900.5230.008
Rv2583c.312pyn_1UN_A_1001PDBCREDO0.5790.2050.5230.008
Rv2583c.262qak_1UN_A_1001PDBCREDO0.5360.2640.5230.008
Rv2583c.262q64_1UN_B_1001PDBCREDO0.5350.2650.5220.008
Rv2583c.453ms9_STI_B_1PDBCREDO0.5540.2390.5220.008
Rv2583c.263ndt_ROC_D_100PDBCREDO0.5480.2470.5220.008
Rv2583c.313kk6_CEL_B_1701PDBCREDO0.5650.2230.5220.008
Rv2583c.451jg2_ADN_A_500PDBCREDO0.7180.0680.5210.008
Rv2583c.452fum_MIX_D_3539PDBCREDO0.6940.0860.5210.008
Rv2583c.453oht_1N1_B_1000PDBCREDO0.7440.0510.5210.008
Rv2583c.312q63_1UN_A_1001PDBCREDO0.5770.2080.5210.008
Rv2583c.262pyn_1UN_A_1001PDBCREDO0.5340.2670.5210.008
Rv2583c.452jfa_RAL_A_600PDBCREDO0.5880.1930.5210.008
Rv2583c.262q63_1UN_A_1001PDBCREDO0.5330.2680.5200.008
Rv2583c.313spk_TPV_B_100PDBCREDO0.6480.1260.5200.008
Rv2583c.453pyy_STI_B_4PDBCREDO0.5510.2430.5200.008
Rv2583c.311c6y_MK1_B_524PDBCREDO0.5480.2470.5190.008
Rv2583c.453k5v_STI_B_2PDBCREDO0.5500.2440.5190.008
Rv2583c.452hyy_STI_D_600PDBCREDO0.5500.2450.5180.008
Rv2583c.453mss_STI_A_1PDBCREDO0.5490.2450.5180.008
Rv2583c.453e22_LOC_B_700PDBCREDO0.5850.1970.5180.008
Rv2583c.453e22_LOC_D_700PDBCREDO0.5850.1970.5180.008
Rv2583c.241jkh_EFZ_A_999PDBCREDO0.6170.1590.5180.008
Rv2583c.453mss_STI_D_1PDBCREDO0.5490.2460.5180.008
Rv2583c.453mss_STI_B_1PDBCREDO0.5480.2460.5170.008
Rv2583c.313ogq_AB1_A_200PDBCREDO0.5440.2520.5170.008
Rv2583c.451iep_STI_A_201PDBCREDO0.5480.2470.5170.008
Rv2583c.451iep_STI_B_202PDBCREDO0.5480.2470.5170.008
Rv2583c.452hyy_STI_C_600PDBCREDO0.5480.2470.5170.008
Rv2583c.453ms9_STI_A_1PDBCREDO0.5480.2470.5170.008
Rv2583c.452hyy_STI_A_600PDBCREDO0.5470.2480.5160.009
Rv2583c.453gvu_STI_A_1001PDBCREDO0.5470.2480.5160.009
Rv2583c.453mss_STI_C_1PDBCREDO0.5470.2480.5160.009
Rv2583c.313oez_STI_B_601PDBCREDO0.7490.0490.5160.009
Rv2583c.451sgu_MK1_B_2632PDBCREDO0.5470.2490.5160.009
Rv2583c.452o4n_TPV_A_300PDBCREDO0.5450.2520.5130.009
Rv2583c.242x7h_PFN_A_1372PDBCREDO0.5370.2620.5130.009
Rv2583c.313hec_STI_A_1PDBCREDO0.7440.0510.5130.009
Rv2583c.312pl0_STI_A_200PDBCREDO0.6770.1000.5110.009
Rv2583c.312y6o_1N1_A_1892PDBCREDO0.7650.0400.5110.009
Rv2583c.451hwi_115_A_2PDBCREDO0.6340.1400.5100.009
Rv2583c.313nxu_RIT_A_600PDBCREDO0.5520.2420.5090.009
Rv2583c.263ogq_AB1_A_200PDBCREDO0.5490.2460.5090.009
Rv2583c.242x1l_ADN_C_601PDBCREDO0.5330.2690.5090.009
Rv2583c.453ogp_017_B_200PDBCREDO0.5390.2590.5080.010
Rv2583c.452jfa_RAL_B_600PDBCREDO0.5570.2350.5080.010
Rv2583c.313nxu_RIT_B_600PDBCREDO0.5500.2440.5080.010
Rv2583c.451uob_PNN_A_1311PDBCREDO0.5230.2830.5070.010
Rv2583c.313kk6_CEL_A_701PDBCREDO0.5200.2880.5060.010
Rv2583c.242uxp_CLM_B_1211PDBCREDO0.5060.3090.5060.010
Rv2583c.311y0x_T44_X_500PDBCREDO0.6900.0880.5060.010
Rv2583c.241pbc_BHA_A_396PDBCREDO0.5300.2730.5060.010
Rv2583c.452qxs_RAL_A_600PDBCREDO0.6000.1790.5060.010
Rv2583c.452qxs_RAL_B_600PDBCREDO0.6000.1790.5060.010
Rv2583c.451err_RAL_A_600PDBCREDO0.5530.2390.5050.010
Rv2583c.453tkd_CYZ_B_267PDBCREDO0.5370.2630.5050.010
Rv2583c.452nni_MTK_A_501PDBCREDO0.5200.2870.5050.010
Rv2583c.452z54_AB1_A_200PDBCREDO0.5200.2870.5050.010
Rv2583c.553c9j_308_B_101PDBCREDO0.5420.2550.5050.010
Rv2583c.451hsh_MK1_C_402PDBCREDO0.6150.1610.5050.010
Rv2583c.312jfa_RAL_B_600PDBCREDO0.7100.0730.5050.010
Rv2583c.311err_RAL_A_600PDBCREDO0.7100.0740.5040.010
Rv2583c.311err_RAL_B_600PDBCREDO0.7090.0740.5040.010
Rv2583c.311n49_RIT_B_301PDBCREDO0.5610.2280.5040.010
Rv2583c.261hxw_RIT_B_301PDBCREDO0.5570.2340.5040.010
Rv2583c.262fxd_DR7_A_102PDBCREDO0.6030.1760.5030.010
Rv2583c.242vuf_FUA_B_2001PDBCREDO0.5270.2770.5030.010
Rv2583c.451hsh_MK1_A_401PDBCREDO0.6130.1640.5030.010
Rv2583c.263k4v_ROC_D_201PDBCREDO0.5530.2390.5030.010
Rv2583c.263el4_ROC_A_100PDBCREDO0.5400.2580.5030.010
Rv2583c.242bxc_P1Z_B_2001PDBCREDO0.5500.2440.5020.011
Rv2583c.311rl8_RIT_A_9001PDBCREDO0.5700.2170.5020.011
Rv2583c.451d4y_TPV_A_501PDBCREDO0.5330.2680.5020.011
Rv2583c.311skx_RFP_A_1PDBCREDO0.5440.2530.5020.011
Rv2583c.451err_RAL_B_600PDBCREDO0.5490.2450.5010.011
Rv2583c.311hwk_117_B_1PDBCREDO0.6070.1710.5010.011
Rv2583c.312jfa_RAL_A_600PDBCREDO0.7270.0620.5010.011
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
pppGppPubChem0.977683.14
guanosine tetraphosphatePubChem0.972603.16
guanosine diphosphatePubChem0.953443.201
guanosine triphosphatePubChem0.944523.18
pyrophosphatePubChem0.935177.975
phosphatePubChem0.92796.9872
adenosine triphosphatePubChem0.916507.181
H(+)PubChem0.92.01588
deuteriumPubChem0.92.01588
adenosine diphosphatePubChem0.9427.201
protiumPubChem0.92.01576
hydroxyl radicalsPubChem0.917.0073
adenosine monophosphatePubChem0.9347.221
undecylprodigiosinPubChem0.76393.565
actinorhodinPubChem0.749634.54