Tuberculist information
Gene namegatB
Protein functionProbable glutamyl-tRNA(GLN) amidotransferase (subunit B) GatB (Glu-ADT subunit B)
Functional category(tuberculist)information pathways
Gene location(kb)3367.26
Molecular mass(da)54632.9
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 509
	  		  	1    MTVAAGAAKAAGAELLDYDEVVARFQPVLGLEVHVELSTATKMFCGCTTTFGGEPNTQVC   60
			  	61   PVCLGLPGSLPVLNRAAVESAIRIGLALNCEIVPWCRFARKNYFYPDMPKNYQISQYDEP  120
			  	121  IAINGYLDAPLEDGTTWRVEIERAHMEEDTGKLTHIGSETGRIHGATGSLIDYNRAGVPL  180
			  	181  IEIVTKPIVGAGARAPQIARSYVTALRDLLRALDVSDVRMDQGSMRCDANVSLKPAGTTE  240
			  	241  FGTRTETKNVNSLKSVEVAVRYEMQRQGAILASGGRITQETRHFHEAGYTSAGRTKETAE  300
			  	301  DYRYFPEPDLEPVAPSRELVERLRQTIPELPWLSRRRIQQEWGVSDEVMRDLVNAGAVEL  360
			  	361  VAATVEHGASSEAARAWWGNFLAQKANEAGIGLDELAITPAQVAAVVALVDEGKLSNSLA  420
			  	421  RQVVEGVLAGEGEPEQVMTARGLALVRDDSLTQAAVDEALAANPDVADKIRGGKVAAAGA  480
			  	481  IVGAVMKATRGQADAARVRELVLEACGQG
			  			

Known structures in the PDB
No Known structures
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
GatB_NPF0293426-323
GatB_YqeyPF02637359-506
Mtb Structural Proteome models
Model Number1
Model nameRv3009c
Template2F2A    BPDBCREDO
Template coverage4_411
Template Identity(%)44.4
Model coverage(%)82.3
Normalized DOPE score-0.141

Model Number2
Model nameRv3009c.1
Template1ZQ1    CPDBCREDO
Template coverage5_511
Template Identity(%)20.6
Model coverage(%)93.1
Normalized DOPE score0.852

Structure Models from Chopin
Model Number1
Profilea.182.1.2, d.128.1.5
Click for model details
zscore72.8
Residue begin26
Residue end445
Model Number2
Profiled.128.1.5
Click for model details
zscore65.72
Residue begin26
Residue end328
Model Number3
Profilea.182.1.2
Click for model details
zscore18.22
Residue begin329
Residue end434
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv3009cGene nameConfidence Score
Rv3011cgatA0.999
Rv3012cgatC0.999
Rv2572caspS0.97
Rv2572caspS0.97
Rv2572caspS0.97
Rv3375amiD0.957
Rv2201asnB0.908
Rv2201asnB0.908
Rv2992cgltS0.902
Potential ligand/drug binding sites
Protein ModelPocket NumberDrug Binding Site PMIN ScorePvalue PMINPMAX ScorePvalue PMAX
Rv3009c.193frq_ERY_B_195PDBCREDO0.7050.0770.6190.001
Rv3009c.193jwq_VIA_D_901PDBCREDO0.6280.1470.6070.002
Rv3009c.193ut5_LOC_D_502PDBCREDO0.6800.0970.5970.002
Rv3009c.1223kw2_ADN_B_300PDBCREDO0.6680.1070.5910.002
Rv3009c.192xpv_MIY_A_1209PDBCREDO0.6520.1220.5880.003
Rv3009c.193bbt_FMM_D_91PDBCREDO0.6050.1730.5850.003
Rv3009c.1111uay_ADN_B_1002PDBCREDO0.6170.1590.5820.003
Rv3009c.191hwi_115_A_2PDBCREDO0.6010.1780.5810.003
Rv3009c.193e22_LOC_B_700PDBCREDO0.6580.1170.5780.003
Rv3009c.193e22_LOC_D_700PDBCREDO0.6580.1170.5780.003
Rv3009c.181hwk_117_C_4PDBCREDO0.5760.2080.5760.003
Rv3009c.192h42_VIA_A_901PDBCREDO0.5960.1840.5760.003
Rv3009c.181hwk_117_A_2PDBCREDO0.5750.2110.5750.003
Rv3009c.1221mx1_THA_A_1PDBCREDO0.5730.2130.5730.003
Rv3009c.1223sxr_1N1_B_2PDBCREDO0.6200.1560.5710.004
Rv3009c.181hwk_117_B_1PDBCREDO0.6020.1760.5680.004
Rv3009c.193ut5_LOC_B_502PDBCREDO0.6880.0900.5680.004
Rv3009c.181hwk_117_D_3PDBCREDO0.6020.1770.5670.004
Rv3009c.1223sxr_1N1_A_1PDBCREDO0.6370.1370.5640.004
Rv3009c.1223tmz_06X_A_503PDBCREDO0.5880.1930.5640.004
Rv3009c.193spk_TPV_A_100PDBCREDO0.5630.2260.5630.004
Rv3009c.191hwi_115_D_3PDBCREDO0.6410.1330.5630.004
Rv3009c.181hwl_FBI_B_1PDBCREDO0.5790.2050.5620.004
Rv3009c.191lhv_NOG_A_301PDBCREDO0.6200.1550.5620.004
Rv3009c.191zgy_BRL_A_503PDBCREDO0.5620.2280.5620.004
Rv3009c.193rif_IVM_A_403PDBCREDO0.6450.1290.5620.004
Rv3009c.181hwl_FBI_D_3PDBCREDO0.5780.2060.5610.004
Rv3009c.183ut5_LOC_B_502PDBCREDO0.5940.1860.5600.004
Rv3009c.1111yi4_ADN_A_306PDBCREDO0.7010.0800.5590.004
Rv3009c.191hwi_115_B_1PDBCREDO0.6370.1380.5590.004
Rv3009c.1221fmo_ADN_E_351PDBCREDO0.6060.1710.5580.004
Rv3009c.181hwl_FBI_C_4PDBCREDO0.5730.2120.5570.004
Rv3009c.181hwl_FBI_A_2PDBCREDO0.5730.2130.5560.005
Rv3009c.191jg2_ADN_A_500PDBCREDO0.5940.1860.5550.005
Rv3009c.193jwq_VIA_B_901PDBCREDO0.6370.1380.5540.005
Rv3009c.1111fb7_ROC_A_100PDBCREDO0.6220.1540.5540.005
Rv3009c.193frq_ERY_A_195PDBCREDO0.7340.0570.5540.005
Rv3009c.193rif_IVM_B_403PDBCREDO0.6360.1380.5540.005
Rv3009c.193ri5_IVM_C_350PDBCREDO0.6350.1400.5530.005
Rv3009c.193rif_IVM_A_402PDBCREDO0.6350.1400.5530.005
Rv3009c.193rif_IVM_D_402PDBCREDO0.6350.1400.5530.005
Rv3009c.193ria_IVM_C_349PDBCREDO0.6340.1400.5520.005
Rv3009c.183ut5_LOC_D_502PDBCREDO0.6240.1520.5520.005
Rv3009c.192xkw_P1B_B_1475PDBCREDO0.6340.1410.5510.005
Rv3009c.191sa1_POD_B_700PDBCREDO0.7050.0770.5480.005
Rv3009c.1221fj8_CER_D_500PDBCREDO0.5450.2510.5450.005
Rv3009c.192aa5_STR_B_302PDBCREDO0.5630.2260.5440.005
Rv3009c.1221m17_AQ4_A_999PDBCREDO0.5670.2200.5440.005
Rv3009c.191sa1_POD_D_701PDBCREDO0.6790.0980.5440.006
Rv3009c.193ria_IVM_E_349PDBCREDO0.6980.0820.5440.006
Rv3009c.1221uho_VDN_A_1000PDBCREDO0.5430.2530.5430.006
Rv3009c.191nhz_486_A_800PDBCREDO0.5430.2540.5430.006
Rv3009c.192h77_T3_A_1PDBCREDO0.5430.2540.5430.006
Rv3009c.192aax_PDN_B_503PDBCREDO0.5610.2290.5430.006
Rv3009c.192aa6_STR_B_402PDBCREDO0.5600.2300.5420.006
Rv3009c.1221fj8_CER_B_500PDBCREDO0.5420.2560.5420.006
Rv3009c.193rhw_IVM_A_348PDBCREDO0.6950.0850.5410.006
Rv3009c.192aa5_STR_A_301PDBCREDO0.5590.2310.5410.006
Rv3009c.192aa6_STR_A_401PDBCREDO0.5590.2310.5410.006
Rv3009c.192aax_PDN_A_502PDBCREDO0.5590.2310.5410.006
Rv3009c.192h79_T3_A_1PDBCREDO0.5590.2320.5400.006
Rv3009c.181sa1_POD_B_700PDBCREDO0.5400.2580.5400.006
Rv3009c.191p93_DEX_A_1999PDBCREDO0.5580.2330.5400.006
Rv3009c.191hwk_117_D_3PDBCREDO0.6540.1210.5390.006
Rv3009c.191hwl_FBI_B_1PDBCREDO0.6730.1030.5390.006
Rv3009c.191hwl_FBI_D_3PDBCREDO0.6730.1030.5390.006
Rv3009c.191p93_DEX_B_2999PDBCREDO0.5570.2340.5380.006
Rv3009c.1222w9s_TOP_D_1158PDBCREDO0.5380.2610.5380.006
Rv3009c.191ya3_STR_B_2001PDBCREDO0.5760.2090.5380.006
Rv3009c.191z2b_VLB_C_800PDBCREDO0.6710.1050.5370.006
Rv3009c.191hwi_115_C_4PDBCREDO0.5750.2100.5370.006
Rv3009c.193ri5_IVM_A_349PDBCREDO0.6900.0880.5370.006
Rv3009c.1221fj8_CER_A_500PDBCREDO0.5360.2630.5360.006
Rv3009c.1223tbg_RTZ_A_1PDBCREDO0.5360.2630.5360.006
Rv3009c.192y6o_1N1_A_1892PDBCREDO0.5920.1890.5360.006
Rv3009c.191bsx_T3_A_1PDBCREDO0.5720.2140.5360.006
Rv3009c.191bsx_T3_B_2PDBCREDO0.5720.2140.5360.006
Rv3009c.191jg3_ADN_A_500PDBCREDO0.6380.1360.5360.006
Rv3009c.194eyb_0WO_A_303PDBCREDO0.5940.1860.5360.006
Rv3009c.1222uxo_TAC_B_1211PDBCREDO0.5820.2020.5360.006
Rv3009c.191uwh_BAX_A_1723PDBCREDO0.6480.1260.5350.006
Rv3009c.193gws_T3_X_500PDBCREDO0.5710.2150.5350.006
Rv3009c.191uwh_BAX_B_1723PDBCREDO0.6470.1270.5340.006
Rv3009c.1222fum_MIX_B_1539PDBCREDO0.5800.2040.5340.006
Rv3009c.181sa1_POD_D_701PDBCREDO0.5490.2450.5330.007
Rv3009c.191cil_ETS_A_263PDBCREDO0.5510.2420.5330.007
Rv3009c.191ya3_STR_A_1001PDBCREDO0.5700.2160.5330.007
Rv3009c.1221fj8_CER_C_500PDBCREDO0.5320.2700.5320.007
Rv3009c.193aod_RFP_C_2002PDBCREDO0.6320.1420.5310.007
Rv3009c.193ria_IVM_E_348PDBCREDO0.6810.0960.5310.007
Rv3009c.191hwl_FBI_C_4PDBCREDO0.6620.1130.5300.007
Rv3009c.193rhw_IVM_D_348PDBCREDO0.6800.0970.5290.007
Rv3009c.193ria_IVM_C_350PDBCREDO0.6800.0970.5290.007
Rv3009c.193rhw_IVM_B_349PDBCREDO0.6790.0980.5290.007
Rv3009c.193rhw_IVM_D_349PDBCREDO0.6790.0980.5290.007
Rv3009c.191hwk_117_B_1PDBCREDO0.7210.0650.5290.007
Rv3009c.191hwl_FBI_A_2PDBCREDO0.6600.1140.5290.007
Rv3009c.1393ond_ADN_A_506PDBCREDO0.5500.2440.5290.007
Rv3009c.1224agd_B49_A_2000PDBCREDO0.5280.2750.5280.007
Rv3009c.193rhw_IVM_B_348PDBCREDO0.6790.0980.5280.007
Rv3009c.1222fum_MIX_C_2539PDBCREDO0.5970.1830.5280.007
Rv3009c.192h42_VIA_B_902PDBCREDO0.6060.1710.5280.007
Rv3009c.193ri5_IVM_B_349PDBCREDO0.6780.0990.5280.007
Rv3009c.1223nrr_D16_B_530PDBCREDO0.5730.2130.5270.007
Rv3009c.193tne_RIT_A_401PDBCREDO0.6010.1780.5270.007
Rv3009c.193ria_IVM_A_348PDBCREDO0.6760.1000.5270.007
Rv3009c.191xzx_T3_X_500PDBCREDO0.5810.2030.5260.007
Rv3009c.193tkd_CYZ_A_266PDBCREDO0.5990.1800.5260.007
Rv3009c.192prg_BRL_A_1PDBCREDO0.5830.2000.5260.007
Rv3009c.193qt0_486_A_4PDBCREDO0.5440.2520.5260.007
Rv3009c.1221mx1_THA_D_4PDBCREDO0.5940.1860.5250.007
Rv3009c.191fm6_BRL_D_503PDBCREDO0.5820.2010.5250.007
Rv3009c.192a69_RPT_M_8002PDBCREDO0.5250.2800.5250.007
Rv3009c.193ri5_IVM_D_349PDBCREDO0.6740.1020.5250.007
Rv3009c.193rif_IVM_E_402PDBCREDO0.6740.1020.5250.007
Rv3009c.194eb6_VLB_C_503PDBCREDO0.6030.1750.5250.007
Rv3009c.1223kw2_ADN_A_300PDBCREDO0.6650.1100.5240.008
Rv3009c.1222bxf_DZP_B_2001PDBCREDO0.6250.1510.5240.008
Rv3009c.191hwk_117_A_2PDBCREDO0.6740.1020.5240.008
Rv3009c.191hwk_117_C_4PDBCREDO0.6740.1020.5240.008
Rv3009c.192nni_MTK_A_501PDBCREDO0.6930.0860.5230.008
Rv3009c.1223hbb_TMQ_C_613PDBCREDO0.5690.2180.5220.008
Rv3009c.1221mx1_THA_F_6PDBCREDO0.5900.1920.5220.008
Rv3009c.181hwi_115_D_3PDBCREDO0.5890.1920.5220.008
Rv3009c.193h0a_9RA_A_500PDBCREDO0.5390.2590.5210.008
Rv3009c.181hwi_115_B_1PDBCREDO0.5880.1940.5200.008
Rv3009c.1223qlg_1N1_B_601PDBCREDO0.6110.1660.5200.008
Rv3009c.193oct_1N1_A_663PDBCREDO0.5560.2360.5190.008
Rv3009c.193oht_1N1_B_1000PDBCREDO0.5760.2090.5190.008
Rv3009c.193uvv_T3_A_501PDBCREDO0.5730.2130.5190.008
Rv3009c.183frq_ERY_A_195PDBCREDO0.5350.2660.5190.008
Rv3009c.191p93_DEX_C_3999PDBCREDO0.5540.2380.5190.008
Rv3009c.191p93_DEX_D_4999PDBCREDO0.5540.2380.5190.008
Rv3009c.193k2h_LYA_B_514PDBCREDO0.5750.2100.5190.008
Rv3009c.1223g0e_B49_A_9000PDBCREDO0.5630.2260.5180.008
Rv3009c.1223g5d_1N1_B_1PDBCREDO0.6090.1680.5180.008
Rv3009c.183e22_LOC_B_700PDBCREDO0.5850.1980.5180.008
Rv3009c.1223adx_IMN_B_3PDBCREDO0.5610.2290.5170.008
Rv3009c.191m2z_DEX_D_401PDBCREDO0.5520.2410.5170.008
Rv3009c.192ab2_SNL_A_502PDBCREDO0.5880.1930.5160.009
Rv3009c.183e22_LOC_D_700PDBCREDO0.5830.2000.5160.009
Rv3009c.1222gqg_1N1_A_501PDBCREDO0.7050.0770.5160.009
Rv3009c.1223clb_TMQ_A_611PDBCREDO0.5620.2270.5160.009
Rv3009c.1223mdv_CL6_A_506PDBCREDO0.6150.1610.5160.009
Rv3009c.191uwj_BAX_A_1723PDBCREDO0.7240.0630.5160.009
Rv3009c.192ab2_SNL_B_503PDBCREDO0.5880.1940.5160.009
Rv3009c.1223g5d_1N1_A_1PDBCREDO0.6060.1710.5160.009
Rv3009c.1223qlg_1N1_A_601PDBCREDO0.6060.1710.5160.009
Rv3009c.193ln1_CEL_D_682PDBCREDO0.5330.2680.5150.009
Rv3009c.191m2z_DEX_A_301PDBCREDO0.5500.2440.5150.009
Rv3009c.1223grv_ADN_A_300PDBCREDO0.6430.1310.5150.009
Rv3009c.1221udu_CIA_B_2003PDBCREDO0.5370.2630.5140.009
Rv3009c.1222bxf_DZP_A_2001PDBCREDO0.6120.1650.5130.009
Rv3009c.1223nrr_D16_A_530PDBCREDO0.5360.2640.5130.009
Rv3009c.193f4x_KLT_A_300PDBCREDO0.6590.1160.5130.009
Rv3009c.193h52_486_C_4PDBCREDO0.5900.1920.5130.009
Rv3009c.1223k54_1N1_A_1PDBCREDO0.6750.1020.5120.009
Rv3009c.1223b2r_VDN_A_1PDBCREDO0.5840.1990.5120.009
Rv3009c.193gn8_DEX_B_247PDBCREDO0.5470.2480.5120.009
Rv3009c.1223nrr_D16_A_520PDBCREDO0.5570.2340.5120.009
Rv3009c.1222ity_IRE_A_2020PDBCREDO0.5780.2060.5110.009
Rv3009c.193gn8_DEX_A_247PDBCREDO0.5460.2490.5110.009
Rv3009c.193mne_DEX_A_784PDBCREDO0.5460.2490.5110.009
Rv3009c.192q1v_PDN_A_248PDBCREDO0.5470.2470.5110.009
Rv3009c.192oax_SNL_B_2001PDBCREDO0.5810.2030.5100.009
Rv3009c.191fm6_BRL_X_504PDBCREDO0.5620.2270.5090.009
Rv3009c.191uwj_BAX_B_1723PDBCREDO0.6550.1200.5090.010
Rv3009c.182nni_MTK_A_501PDBCREDO0.5240.2820.5090.010
Rv3009c.1391v8b_ADN_C_2502PDBCREDO0.5290.2740.5080.010
Rv3009c.192oax_SNL_C_3001PDBCREDO0.5790.2060.5080.010
Rv3009c.191lhu_EST_A_301PDBCREDO0.5630.2260.5080.010
Rv3009c.181hwi_115_A_2PDBCREDO0.6310.1440.5070.010
Rv3009c.1223b2r_VDN_B_1PDBCREDO0.5770.2080.5060.010
Rv3009c.1393ond_ADN_B_507PDBCREDO0.5500.2440.5060.010
Rv3009c.192h42_VIA_C_903PDBCREDO0.5810.2020.5060.010
Rv3009c.1221xp0_VDN_A_201PDBCREDO0.5270.2770.5050.010
Rv3009c.1223uq6_ADN_A_401PDBCREDO0.6310.1440.5050.010
Rv3009c.192hw2_RFP_A_1200PDBCREDO0.5750.2100.5050.010
Rv3009c.1223fuu_ADN_A_0PDBCREDO0.5930.1870.5050.010
Rv3009c.193vhu_SNL_A_1001PDBCREDO0.5750.2110.5040.010
Rv3009c.1221udt_VIA_A_1000PDBCREDO0.5730.2130.5030.010
Rv3009c.193tkd_CYZ_B_267PDBCREDO0.6090.1680.5030.010
Rv3009c.1223vri_1KX_A_301PDBCREDO0.5670.2200.5020.011
Rv3009c.193h52_486_D_2PDBCREDO0.6080.1700.5020.011
Rv3009c.1221s9p_DES_B_459PDBCREDO0.5660.2210.5010.011
Rv3009c.192prg_BRL_B_2PDBCREDO0.5560.2360.5010.011
Rv3009c.191uob_PNN_A_1311PDBCREDO0.6250.1500.5010.011
Rv3009c.192vke_TAC_A_222PDBCREDO0.6680.1070.5010.011
Rv3009c.1221s9p_DES_C_500PDBCREDO0.5660.2230.5000.011
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
zincPubChem0.84965.409
aspartatePubChem0.823133.103
magnesiumPubChem0.79824.305
manganesePubChem0.78854.938
L-asparaginePubChem0.788132.118
adenosine diphosphatePubChem0.788427.201
polyglutaminePubChem0.788146.145
adenosine triphosphatePubChem0.705507.181
5'-O-[N-(L-glutamyl)-sulfamoyl] adenosinePubChem0.701475.434