SInCRe - Rv3314c

Tuberculist information

Gene name	deoA
Protein function	Probable thymidine phosphorylase DeoA (tdrpase) (pyrimidine phosphorylase)
Functional category(tuberculist)	intermediary metabolism and respiration
Gene location(kb)	3702.18
Molecular mass(da)	44454
External sites	TB Database TubercuList WebTB

Protein sequence

Number of amino acids : 427

	  		  	1    VTDFAFDAPTVIRTKRDGGRLSDAAIDWVVKAYTDGRVADEQMSALLMAIVWRGMDRGEI   60
			  	61   ARWTAAMLASGARLDFTDLPLATVDKHSTGGVGDKITLPLVPVVAACGGAVPQASGRGLG  120
			  	121  HTGGTLDKLESITGFTANLSNQRVREQLCDVGAAIFAAGQLAPADAKLYALRDITGTVES  180
			  	181  LPLIASSIMSKKLAEGAGALVLDVKVGSGAFMRSPVQARELAHTMVELGAAHGVPTRALL  240
			  	241  TEMNCPLGRTVGNALEVAEALEVLAGGGPPDVVELTLRLAGEMLELAGIHGRDPAQTLRD  300
			  	301  GTAMDRFRRLVAAQGGDLSKPLPIGSHSETVTAGASGTMGDIDAMAVGLAAWRLGAGRSR  360
			  	361  PGARVQHGAGVRIHRRPGEPVVVGEPLFTLYTNAPERFGAARAELAGGWSIRDSPPQVRP  420
			  	421  LIVDRIV

Known structures in the PDB

No Known structures

Number of amino acids : 427

Domains assigned based on sequence.

Mtb Structural proteome models

CHOPIN models

Profile-based domain assignment

Structural/Functional domain family	Pfam acc.no./SCOP ID	Domain Region
Glycos_trans_3N	PF02885	7-72
Glycos_transf_3	PF00591	80-320
PYNP_C	PF07831	338-412

Mtb Structural Proteome models

Model Number	1
Model name	Rv3314c
Template	1BRW APDB CREDO
Template coverage	6_433
Template Identity(%)	48.4
Model coverage(%)	97.4
Normalized DOPE score	-0.63

Structure Models from Chopin

Model Number	1
Profile	1.20.970.10, 3.40.1030.10, 3.90.1170.30 Click for model details
zscore	59.17
Residue begin	2
Residue end	427

Model Number	2
Profile	3.40.1030.10 Click for model details
zscore	30.38
Residue begin	80
Residue end	320

Model Number	3
Profile	3.90.1170.30 Click for model details
zscore	25.56
Residue begin	322
Residue end	421

Model Number	4
Profile	c.27.1.1 Click for model details
zscore	20.68
Residue begin	72
Residue end	420

Model Number	5
Profile	d.41.3.1 Click for model details
zscore	17.98
Residue begin	338
Residue end	412

Model Number	6
Profile	1.20.970.10 Click for model details
zscore	16.7
Residue begin	5
Residue end	75

Binding pockets

STRING

Cytoscape Web will replace the contents of this div with protein-protein interaction network.

Protein interacting with Rv3314c	Gene name	Confidence Score
Rv3309c	upp	0.999
Rv3315c	cdd	0.999
Rv3313c	add	0.979
Rv0478	deoC	0.977
Rv2584c	apt	0.954
Rv3307	deoD	0.941
Rv2764c	thyA	0.94
Rv1379	pyrR	0.934

Potential ligand/drug binding sites

No binding sites identified

Similarity to known drug target from sensitive sequence analysis

No drug targets

List of small molecules tested from TIBLE

Data not available

Off-target activity - ligand based from TIBLE

Data not available

Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.

Data not available

STITCH interactions

Chemical Name	Confidence score	Molecular Weight
thyminePubChem	0.995	126.113
thymidinePubChem	0.995	242.229
deoxyuridinePubChem	0.984	228.202
uracilPubChem	0.975	112.087
thymidylatePubChem	0.97	322.208
deoxyribose-1-phosphatePubChem	0.962	214.11
2-deoxy-D-ribose-1-phosphatePubChem	0.951	214.11
deoxyribose 5-phosphatePubChem	0.935	214.11
2-deoxy-alpha-D-ribose 1-phosphatePubChem	0.927	214.11
phosphatePubChem	0.912	96.9872
H(+)PubChem	0.903	2.01588
deuteriumPubChem	0.903	2.01588
protiumPubChem	0.9	2.01576
adenosine diphosphatePubChem	0.9	427.201
thymidine-2-14CPubChem	0.9	242.229
adenosine triphosphatePubChem	0.9	507.181
2-deoxy-d-ribose-5-phosphatePubChem	0.9	214.11
CHEBI:16450PubChem	0.9	228.202
docetaxelPubChem	0.847	807.879
5'-DFURPubChem	0.82	246.192
sulfatePubChem	0.809	96.0626
JFDPubChem	0.8	205.997
5-iodouracilPubChem	0.798	237.983
5-fluoro-6-[(2-aminoimidazol-1-yl)methyl]uracilPubChem	0.796	225.18
6-aminothyminePubChem	0.793	141.128
hydron sulfatePubChem	0.785	196.157
uridinePubChem	0.776	244.201
glycerolPubChem	0.745	92.0938
chloridePubChem	0.736	35.453
pyrimidine nucleosidePubChem	0.713	213.211