Rv3052c

Tuberculist information
Gene namenrdI
Protein functionProbable NrdI protein
Functional category(tuberculist)information pathways
Gene location(kb)3414.23
Molecular mass(da)16490.7
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 150
	  		  	1    MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGL   60
			  	61   DAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELM  120
			  	121  GTEDDVAAVRTGLAEFWKEQTCHQPSLQSL

Known structures in the PDB
No Known structures
1 16 31 46 61 76 91 106 121 136 151 Range: 9 to 131  |  Coverage: 81% Flavodoxin_NdrI Range: 2 to 143  |  Coverage: 94% 1 Range: 1 to 144  |  Coverage: 95% 1
Number of amino acids : 150
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Flavodoxin_NdrIPF079729-131
Mtb Structural Proteome models
Model Number1
Model nameRv3052c
Template1RLJ    APDBCREDO
Template coverage-4_125
Template Identity(%)31.8
Model coverage(%)94.0
Normalized DOPE score-1.388

Structure Models from Chopin
Model Number1
Profilec.23.5.7 - 3.40.50.360
Click for model details
zscore24.66
Residue begin1
Residue end144
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv3052cGene nameConfidence Score
Rv3051cnrdE0.999
Rv3053cnrdH0.999
Rv3051cnrdE0.999
Rv3051cnrdE0.999
Rv1981cnrdF10.998
Rv3048cnrdF20.996
Rv2764cthyA0.907
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
flavin mononucleotidePubChem0.797456.344
manganesePubChem0.79554.938
zincPubChem0.76765.409
dimethylarsinic acidPubChem0.767137.997
hydrogen peroxidePubChem0.75634.0147