Rv3513c

Tuberculist information
Gene namefadD18
Protein functionProbable fatty-acid-CoA ligase FadD18 (fragment) (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase)
Functional category(tuberculist)lipid metabolism
Gene location(kb)3945.09
Molecular mass(da)23630.4
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 218
	  		  	1    MAASLSENLSCHSSNMCRLSGNAATNLERPGEEPPGDRCTRRQAVRPARTLAKKGNIPVG   60
			  	61   YYKDEKKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAA  120
			  	121  LKGHPDVFDALVVGVPDPRYGQQVAAVVQARPGCRPSLAELDSFVRSEIAGYKVPRSLWF  180
			  	181  VDEVKRSPAGKPDYRWAKEQTEARPADDVHAGHVTSGS

Known structures in the PDB
No Known structures
1 22 43 64 85 106 127 148 169 190 211 Range: 47 to 132  |  Coverage: 38% AMP-binding Range: 116 to 191  |  Coverage: 34% AMP-binding_C Range: 3 to 204  |  Coverage: 92% 1 Range: 1 to 218  |  Coverage: 99% 1 Range: 21 to 100  |  Coverage: 36% 2 Range: 99 to 208  |  Coverage: 50% 3
Number of amino acids : 218
Domains assigned based on sequence. Mtb Structural proteome models CHOPIN models
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
AMP-bindingPF0050147-132
AMP-binding_CPF13193116-191
Mtb Structural Proteome models
Model Number1
Model nameRv3513c
Template1MDB    APDBCREDO
Template coverage330_532
Template Identity(%)28.2
Model coverage(%)92.2
Normalized DOPE score0.239

Structure Models from Chopin
Model Number1
Profilee.23.1.1
Click for model details
zscore38.21
Residue begin1
Residue end218
Model Number2
Profile2.30.38.10
Click for model details
zscore15.87
Residue begin21
Residue end100
Model Number3
Profile3.30.300.30
Click for model details
zscore13.17
Residue begin99
Residue end208
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv3513cGene nameConfidence Score
Rv3516echA190.914
Potential ligand/drug binding sites
No binding sites identified
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
Chemical NameConfidence scoreMolecular Weight
C0885PubChem0.9917.752
C11946PubChem0.9917.752
reduced nicotinamide adenine dinucleotidePubChem0.9665.441
dihydronicotinamide formycin dinucleotidePubChem0.9665.441
adenosine triphosphatePubChem0.9507.181
pyrophosphatePubChem0.9177.975
3-hydroxypropionyl-CoAPubChem0.9839.597
octanoatePubChem0.9144.211
3-hydroxypropionyl-coenzyme APubChem0.9839.597
c0682PubChem0.9168.233
octanalPubChem0.9128.212
trans-2-methyl-5-isopropylhexa-2,5-dienoic acidPubChem0.9168.233
protiumPubChem0.92.01576
NAD+PubChem0.9663.425
H(+)PubChem0.92.01588
adenosine monophosphatePubChem0.9347.221
hydroxyl radicalsPubChem0.917.0073
Co-APubChem0.9767.534
coenzyme APubChem0.9767.534
perillic acidPubChem0.9166.217
CO8PubChem0.9893.73
octanoyl-CoAPubChem0.9893.73
(3R)-3-isopropenyl-6-oxoheptanoatePubChem0.9183.224
C11945PubChem0.9917.752
deuteriumPubChem0.92.01588