Tuberculist information
Gene namealkA
Protein functionProbable bifunctional regulatory protein and DNA repair enzyme AlkA (regulatory protein of adaptative response) (methylphosphotriester-DNA--protein-cysteine S-methyltransferase)
Functional category(tuberculist)information pathways
Gene location(kb)1477.63
Molecular mass(da)53710.5
External sites TB Database TubercuList WebTB
Protein sequence
Number of amino acids : 496
	  		  	1    VHDDFERCYRAIQSKDARFDGWFVVAVLTTGVYCRPSCPVRPPFARNVRFLPTAAAAQGE   60
			  	61   GFRACKRCRPDASPGSPEWNVRSDVVARAMRLIADGTVDRDGVSGLAAQLGYTIRQLERL  120
			  	121  LQAVVGAGPLALARAQRMQTARVLIETTNLPFGDVAFAAGFSSIRQFNDTVRLACDGTPT  180
			  	181  ALRARAAARFESATASAGTVSLRLPVRAPFAFEGVFGHLAATAVPGCEEVRDGAYRRTLR  240
			  	241  LPWGNGIVSLTPAPDHVRCLLVLDDFRDLMTATARCRRLLDLDADPEAIVEALGADPDLR  300
			  	301  AVVGKAPGQRIPRTVDEAEFAVRAVLAQQVSTKAASTHAGRLVAAYGRPVHDRHGALTHT  360
			  	361  FPSIEQLAEIDPGHLAVPKARQRTINALVASLADKSLVLDAGCDWQRARGQLLALPGVGP  420
			  	421  WTAEVIAMRGLGDPDAFPASDLGLRLAAKKLGLPAQRRALTVHSARWRPWRSYATQHLWT  480
			  	481  TLEHPVNQWPPQEKIA
			  			

Known structures in the PDB
No Known structures
Profile-based domain assignment
Structural/Functional domain familyPfam acc.no./SCOP IDDomain Region
Ada_Zn_bindingPF028056-71
HTH_18PF12833106-185
AlkA_NPF06029201-316
HhH-GPDPF00730322-471
Mtb Structural Proteome models
Model Number1
Model nameRv1317c.2
Template1BL0    APDBCREDO
Template coverage12_110
Template Identity(%)19.2
Model coverage(%)19.8
Normalized DOPE score-0.685

Model Number2
Model nameRv1317c.1
Template1U8B    APDBCREDO
Template coverage1_138
Template Identity(%)37.4
Model coverage(%)27.8
Normalized DOPE score-0.392

Model Number3
Model nameRv1317c
Template1MPG    APDBCREDO
Template coverage1_274
Template Identity(%)30.7
Model coverage(%)56.5
Normalized DOPE score-0.368

Structure Models from Chopin
Model Number1
Profile3.40.10.10
Click for model details
zscore25.25
Residue begin4
Residue end73
Model Number2
Profilea.96.1.3
Click for model details
zscore25.21
Residue begin304
Residue end489
Model Number3
Profile3.30.310.20
Click for model details
zscore18.65
Residue begin201
Residue end316
Model Number4
Profile1.10.340.30
Click for model details
zscore15.14
Residue begin308
Residue end434
Binding pockets
STRING
Cytoscape Web will replace the contents of this div with protein-protein interaction network.
Protein interacting with Rv1317cGene nameConfidence Score
Rv1316cogt0.991
Rv1316cogt0.991
Potential ligand/drug binding sites
Protein ModelPocket NumberDrug Binding Site PMIN ScorePvalue PMINPMAX ScorePvalue PMAX
Rv1317c.211ya4_CTX_B_2PDBCREDO0.7550.0450.6250.001
Rv1317c.121y0x_T44_X_500PDBCREDO0.7010.0800.6220.001
Rv1317c.211ya4_CTX_C_3PDBCREDO0.7500.0480.6210.001
Rv1317c.123uvv_T3_A_501PDBCREDO0.7510.0470.6070.002
Rv1317c.122oax_SNL_D_4001PDBCREDO0.6630.1120.6070.002
Rv1317c.122oax_SNL_F_6001PDBCREDO0.6620.1130.6060.002
Rv1317c.122oax_SNL_E_5001PDBCREDO0.6600.1150.6040.002
Rv1317c.122oax_SNL_A_1001PDBCREDO0.6580.1170.6020.002
Rv1317c.121xzx_T3_X_500PDBCREDO0.7440.0510.6020.002
Rv1317c.123kk6_CEL_B_1701PDBCREDO0.6680.1070.5980.002
Rv1317c.122h79_T3_A_1PDBCREDO0.7880.0290.5970.002
Rv1317c.123gws_T3_X_500PDBCREDO0.7620.0410.5970.002
Rv1317c.123b0w_DGX_B_1PDBCREDO0.6310.1430.5970.002
Rv1317c.213erd_DES_B_800PDBCREDO0.5940.1870.5940.002
Rv1317c.123frq_ERY_A_195PDBCREDO0.6100.1680.5920.002
Rv1317c.121uwj_BAX_A_1723PDBCREDO0.6080.1690.5910.002
Rv1317c.121bsx_T3_A_1PDBCREDO0.7550.0450.5910.002
Rv1317c.121bsx_T3_B_2PDBCREDO0.7550.0450.5910.002
Rv1317c.123vhu_SNL_A_1001PDBCREDO0.7060.0760.5900.003
Rv1317c.213rif_IVM_A_403PDBCREDO0.5870.1950.5870.003
Rv1317c.123mno_DEX_A_784PDBCREDO0.6810.0960.5860.003
Rv1317c.123bjw_SVR_E_503PDBCREDO0.6740.1020.5860.003
Rv1317c.123mnp_DEX_A_784PDBCREDO0.6800.0970.5860.003
Rv1317c.213bbt_FMM_D_91PDBCREDO0.6510.1240.5860.003
Rv1317c.211mx1_THA_C_3PDBCREDO0.6060.1710.5850.003
Rv1317c.121uob_PNN_A_1311PDBCREDO0.6380.1360.5840.003
Rv1317c.122ab2_SNL_A_502PDBCREDO0.6990.0820.5830.003
Rv1317c.122h77_T3_A_1PDBCREDO0.7950.0260.5830.003
Rv1317c.122oax_SNL_C_3001PDBCREDO0.6980.0820.5830.003
Rv1317c.122ab2_SNL_B_503PDBCREDO0.6970.0830.5820.003
Rv1317c.122oax_SNL_B_2001PDBCREDO0.6960.0840.5810.003
Rv1317c.123h52_486_B_1PDBCREDO0.6240.1520.5710.004
Rv1317c.213ri5_IVM_C_350PDBCREDO0.5700.2170.5700.004
Rv1317c.211mx1_THA_E_5PDBCREDO0.5910.1900.5690.004
Rv1317c.213rif_IVM_B_403PDBCREDO0.5690.2170.5690.004
Rv1317c.213rif_IVM_D_402PDBCREDO0.5690.2170.5690.004
Rv1317c.213rif_IVM_A_402PDBCREDO0.5690.2180.5690.004
Rv1317c.213ria_IVM_C_349PDBCREDO0.5680.2200.5680.004
Rv1317c.123tkd_CYZ_B_267PDBCREDO0.6380.1370.5660.004
Rv1317c.123h52_486_D_2PDBCREDO0.6360.1380.5650.004
Rv1317c.123kk6_CEL_A_701PDBCREDO0.7000.0810.5630.004
Rv1317c.121fm6_BRL_X_504PDBCREDO0.6950.0840.5620.004
Rv1317c.123b0w_DGX_A_1PDBCREDO0.5940.1860.5610.004
Rv1317c.133mdv_CL6_B_506PDBCREDO0.5880.1930.5600.004
Rv1317c.123bjw_SVR_F_502PDBCREDO0.6930.0860.5570.004
Rv1317c.253eor_CFV_A_901PDBCREDO0.6950.0840.5570.004
Rv1317c.123gn8_DEX_A_247PDBCREDO0.7110.0730.5570.004
Rv1317c.123ln1_CEL_B_682PDBCREDO0.7110.0730.5570.004
Rv1317c.123mne_DEX_A_784PDBCREDO0.7100.0730.5560.005
Rv1317c.123gn8_DEX_B_247PDBCREDO0.7090.0740.5550.005
Rv1317c.123ln1_CEL_A_682PDBCREDO0.7080.0750.5540.005
Rv1317c.123bjw_SVR_B_501PDBCREDO0.6890.0900.5540.005
Rv1317c.123ln1_CEL_C_682PDBCREDO0.7070.0750.5540.005
Rv1317c.123bjw_SVR_H_504PDBCREDO0.6880.0900.5530.005
Rv1317c.122aa5_STR_A_301PDBCREDO0.7300.0600.5530.005
Rv1317c.121m2z_DEX_A_301PDBCREDO0.7050.0770.5520.005
Rv1317c.211jg2_ADN_A_500PDBCREDO0.5930.1880.5520.005
Rv1317c.121sa1_POD_B_700PDBCREDO0.5850.1980.5520.005
Rv1317c.121p93_DEX_D_4999PDBCREDO0.7040.0780.5510.005
Rv1317c.121uwj_BAX_B_1723PDBCREDO0.5830.1990.5500.005
Rv1317c.122aa6_STR_B_402PDBCREDO0.7260.0620.5500.005
Rv1317c.123vn2_TLS_A_501PDBCREDO0.6390.1360.5500.005
Rv1317c.211n49_RIT_D_401PDBCREDO0.8620.0080.5500.005
Rv1317c.121m2z_DEX_D_401PDBCREDO0.7020.0790.5490.005
Rv1317c.122aa5_STR_B_302PDBCREDO0.7250.0630.5490.005
Rv1317c.133hbb_TMQ_B_612PDBCREDO0.5770.2080.5490.005
Rv1317c.122aax_PDN_B_503PDBCREDO0.7240.0640.5490.005
Rv1317c.121p93_DEX_C_3999PDBCREDO0.7000.0810.5480.005
Rv1317c.122aa6_STR_A_401PDBCREDO0.7230.0640.5480.005
Rv1317c.121hwk_117_B_1PDBCREDO0.5480.2470.5480.005
Rv1317c.122aax_PDN_A_502PDBCREDO0.7220.0650.5470.005
Rv1317c.123frq_ERY_B_195PDBCREDO0.6550.1200.5470.005
Rv1317c.133tq8_TOP_A_2001PDBCREDO0.5720.2140.5440.006
Rv1317c.213spk_TPV_A_100PDBCREDO0.6230.1520.5420.006
Rv1317c.213so9_017_A_100PDBCREDO0.7550.0450.5420.006
Rv1317c.121a28_STR_B_2PDBCREDO0.6690.1070.5410.006
Rv1317c.122xkw_P1B_A_1478PDBCREDO0.6860.0920.5380.006
Rv1317c.123h52_486_A_3PDBCREDO0.6040.1750.5360.006
Rv1317c.123tkd_CYZ_A_266PDBCREDO0.6420.1320.5360.006
Rv1317c.121xkk_FMM_A_91PDBCREDO0.6670.1090.5360.006
Rv1317c.212aoh_FRD_C_305PDBCREDO0.7690.0380.5360.006
Rv1317c.123qt0_486_A_4PDBCREDO0.7540.0460.5340.006
Rv1317c.131dyr_TOP_A_407PDBCREDO0.5330.2680.5330.007
Rv1317c.213bbt_FMM_B_91PDBCREDO0.5960.1840.5330.007
Rv1317c.131qhs_CLM_A_999PDBCREDO0.5600.2300.5330.007
Rv1317c.154dt8_ADN_A_401PDBCREDO0.5570.2340.5320.007
Rv1317c.121zgy_BRL_A_503PDBCREDO0.7250.0630.5310.007
Rv1317c.123ln1_CEL_D_682PDBCREDO0.7500.0480.5310.007
Rv1317c.133fl9_TOP_A_200PDBCREDO0.5590.2320.5310.007
Rv1317c.133fl9_TOP_G_200PDBCREDO0.5590.2320.5310.007
Rv1317c.1112w03_ADN_A_1588PDBCREDO0.5890.1930.5310.007
Rv1317c.122hw2_RFP_A_1200PDBCREDO0.6350.1390.5300.007
Rv1317c.213h52_486_A_3PDBCREDO0.7380.0540.5300.007
Rv1317c.121sa1_POD_D_701PDBCREDO0.5780.2060.5290.007
Rv1317c.213ri5_IVM_A_349PDBCREDO0.5910.1900.5290.007
Rv1317c.213e22_LOC_B_700PDBCREDO0.6920.0870.5280.007
Rv1317c.133rem_SAL_A_301PDBCREDO0.5280.2750.5280.007
Rv1317c.133ay0_ADN_B_402PDBCREDO0.5550.2370.5280.007
Rv1317c.121z2b_VLB_C_800PDBCREDO0.5770.2080.5280.007
Rv1317c.213e22_LOC_D_700PDBCREDO0.6900.0880.5270.007
Rv1317c.211s9p_DES_D_600PDBCREDO0.5460.2490.5270.007
Rv1317c.133rf4_FUN_B_202PDBCREDO0.5270.2770.5270.007
Rv1317c.133rf4_FUN_C_203PDBCREDO0.5270.2770.5270.007
Rv1317c.213rhw_IVM_A_348PDBCREDO0.5890.1930.5270.007
Rv1317c.133tbg_RTZ_B_1PDBCREDO0.6090.1680.5260.007
Rv1317c.123e22_LOC_D_700PDBCREDO0.6300.1450.5260.007
Rv1317c.133rf4_FUN_A_201PDBCREDO0.5260.2790.5260.007
Rv1317c.133ay0_ADN_A_401PDBCREDO0.5530.2400.5260.007
Rv1317c.213ria_IVM_E_349PDBCREDO0.5870.1950.5250.007
Rv1317c.133n8w_FLP_A_701PDBCREDO0.5510.2420.5240.008
Rv1317c.133fl9_TOP_B_200PDBCREDO0.5520.2410.5240.008
Rv1317c.211jg3_ADN_A_500PDBCREDO0.5430.2530.5240.008
Rv1317c.121ya3_STR_A_1001PDBCREDO0.7650.0400.5230.008
Rv1317c.123e22_LOC_B_700PDBCREDO0.6270.1480.5230.008
Rv1317c.1113ilu_HFZ_B_800PDBCREDO0.5230.2830.5230.008
Rv1317c.254dta_ADN_B_401PDBCREDO0.5220.2840.5220.008
Rv1317c.132bdm_TMI_A_502PDBCREDO0.5490.2460.5220.008
Rv1317c.253re0_CPT_B_201PDBCREDO0.5590.2310.5220.008
Rv1317c.121skx_RFP_A_1PDBCREDO0.5830.1990.5220.008
Rv1317c.133s7s_EXM_A_601PDBCREDO0.6040.1740.5220.008
Rv1317c.211s9p_DES_A_459PDBCREDO0.5400.2590.5210.008
Rv1317c.123jwq_VIA_D_901PDBCREDO0.7330.0580.5200.008
Rv1317c.133ilt_TRU_E_800PDBCREDO0.5460.2490.5200.008
Rv1317c.132w9s_TOP_C_1160PDBCREDO0.5470.2490.5190.008
Rv1317c.133qfx_CP6_B_702PDBCREDO0.6080.1690.5190.008
Rv1317c.133tbg_RTZ_D_1PDBCREDO0.5730.2130.5190.008
Rv1317c.121p93_DEX_B_2999PDBCREDO0.7320.0580.5190.008
Rv1317c.121ya3_STR_B_2001PDBCREDO0.7580.0430.5190.008
Rv1317c.1113ik6_HCZ_B_800PDBCREDO0.5180.2910.5180.008
Rv1317c.123ut5_LOC_B_502PDBCREDO0.5820.2010.5170.008
Rv1317c.133ik6_HCZ_B_800PDBCREDO0.5170.2930.5170.008
Rv1317c.133jw5_TOP_A_208PDBCREDO0.5440.2530.5170.008
Rv1317c.121lhv_NOG_A_301PDBCREDO0.6380.1370.5160.009
Rv1317c.123d91_REM_A_350PDBCREDO0.5470.2480.5160.009
Rv1317c.123d91_REM_B_350PDBCREDO0.5470.2490.5160.009
Rv1317c.132bxq_IMN_A_2001PDBCREDO0.5150.2950.5150.009
Rv1317c.133fl9_TOP_C_200PDBCREDO0.5720.2140.5150.009
Rv1317c.133jw5_TOP_B_208PDBCREDO0.5430.2550.5150.009
Rv1317c.133jwq_VIA_C_901PDBCREDO0.5150.2950.5150.009
Rv1317c.133qfx_CP6_A_602PDBCREDO0.6040.1750.5150.009
Rv1317c.122w8y_486_A_1000PDBCREDO0.5450.2510.5140.009
Rv1317c.213erd_DES_A_600PDBCREDO0.5140.2960.5140.009
Rv1317c.121cil_ETS_A_263PDBCREDO0.7250.0630.5140.009
Rv1317c.121p93_DEX_A_1999PDBCREDO0.7240.0640.5130.009
Rv1317c.132w9s_TOP_A_1160PDBCREDO0.5400.2580.5130.009
Rv1317c.1113ijx_HCZ_B_800PDBCREDO0.5130.2990.5130.009
Rv1317c.212aoj_FRD_C_305PDBCREDO0.7810.0320.5130.009
Rv1317c.121nhz_486_A_800PDBCREDO0.6990.0810.5130.009
Rv1317c.123d90_NOG_A_1001PDBCREDO0.6990.0810.5130.009
Rv1317c.211ya3_STR_A_1001PDBCREDO0.5500.2440.5120.009
Rv1317c.132w3v_TOP_A_1169PDBCREDO0.5650.2230.5120.009
Rv1317c.132bxf_DZP_B_2001PDBCREDO0.6210.1550.5120.009
Rv1317c.121hwl_FBI_D_3PDBCREDO0.5580.2330.5110.009
Rv1317c.133gvu_STI_A_1002PDBCREDO0.5980.1820.5100.009
Rv1317c.133ijx_HCZ_B_800PDBCREDO0.5100.3020.5100.009
Rv1317c.132eva_ADN_A_498PDBCREDO0.5360.2640.5100.009
Rv1317c.121hwk_117_A_2PDBCREDO0.5400.2580.5100.009
Rv1317c.133hbb_TMQ_A_611PDBCREDO0.5900.1910.5090.009
Rv1317c.121uwh_BAX_A_1723PDBCREDO0.5730.2120.5090.009
Rv1317c.123d90_NOG_B_2001PDBCREDO0.6950.0850.5090.009
Rv1317c.133hgx_SAL_A_102PDBCREDO0.5960.1840.5090.009
Rv1317c.133ik6_HCZ_B_262PDBCREDO0.5360.2640.5090.009
Rv1317c.1113rf4_FUN_A_201PDBCREDO0.5090.3040.5090.009
Rv1317c.121hwl_FBI_B_1PDBCREDO0.5560.2360.5090.010
Rv1317c.121uwh_BAX_B_1723PDBCREDO0.5730.2130.5090.010
Rv1317c.132jap_J01_C_1249PDBCREDO0.5620.2280.5090.010
Rv1317c.133vkx_T3_A_301PDBCREDO0.5620.2280.5090.010
Rv1317c.123h0a_9RA_A_500PDBCREDO0.7180.0680.5080.010
Rv1317c.213ri5_IVM_B_349PDBCREDO0.5680.2190.5080.010
Rv1317c.213ri5_IVM_D_349PDBCREDO0.5680.2190.5080.010
Rv1317c.213ria_IVM_C_350PDBCREDO0.5680.2190.5080.010
Rv1317c.213rif_IVM_E_402PDBCREDO0.5680.2190.5080.010
Rv1317c.121hwk_117_C_4PDBCREDO0.5390.2600.5080.010
Rv1317c.213rhw_IVM_B_349PDBCREDO0.5670.2200.5080.010
Rv1317c.213rhw_IVM_D_348PDBCREDO0.5670.2200.5080.010
Rv1317c.131fdu_EST_D_352PDBCREDO0.5080.3060.5080.010
Rv1317c.213spk_TPV_B_100PDBCREDO0.7730.0360.5080.010
Rv1317c.122xpv_MIY_A_1209PDBCREDO0.7680.0390.5070.010
Rv1317c.213ria_IVM_A_348PDBCREDO0.5670.2210.5070.010
Rv1317c.213h52_486_C_4PDBCREDO0.5060.3080.5060.010
Rv1317c.213rhw_IVM_B_348PDBCREDO0.5660.2220.5060.010
Rv1317c.213rhw_IVM_D_349PDBCREDO0.5660.2220.5060.010
Rv1317c.133rem_SAL_B_301PDBCREDO0.5060.3080.5060.010
Rv1317c.133ret_SAL_A_201PDBCREDO0.5930.1870.5060.010
Rv1317c.132jap_J01_A_1249PDBCREDO0.5590.2320.5060.010
Rv1317c.133clb_TMQ_C_613PDBCREDO0.5860.1960.5060.010
Rv1317c.213ria_IVM_E_348PDBCREDO0.5650.2240.5050.010
Rv1317c.252wd9_IBP_B_1570PDBCREDO0.5050.3110.5050.010
Rv1317c.131qhy_CLM_A_999PDBCREDO0.5310.2720.5050.010
Rv1317c.133ua5_06X_A_501PDBCREDO0.5310.2720.5050.010
Rv1317c.132qb4_DSM_A_801PDBCREDO0.5040.3120.5040.010
Rv1317c.1113rf4_FUN_C_203PDBCREDO0.5040.3120.5040.010
Rv1317c.231p2y_NCT_A_440PDBCREDO0.5030.3130.5030.010
Rv1317c.213oht_1N1_B_1000PDBCREDO0.5210.2850.5030.010
Rv1317c.132jap_J01_B_1249PDBCREDO0.5550.2370.5030.010
Rv1317c.133clb_TMQ_D_614PDBCREDO0.5820.2010.5030.010
Rv1317c.131jb0_PQN_B_2002PDBCREDO0.5030.3140.5030.010
Rv1317c.132w3a_TOP_B_1189PDBCREDO0.5290.2740.5030.010
Rv1317c.133mg0_BO2_K_1402PDBCREDO0.5580.2330.5030.010
Rv1317c.133mg0_BO2_Y_1403PDBCREDO0.5580.2330.5030.010
Rv1317c.133pcq_PQN_B_842PDBCREDO0.5030.3140.5030.010
Rv1317c.252xfh_CL6_A_1414PDBCREDO0.5020.3150.5020.011
Rv1317c.253cfq_DIF_B_1PDBCREDO0.5810.2020.5020.011
Rv1317c.253re0_CPT_C_201PDBCREDO0.5020.3150.5020.011
Rv1317c.133mdv_CL6_A_506PDBCREDO0.6090.1680.5020.011
Rv1317c.133hbb_TMQ_D_614PDBCREDO0.5810.2030.5020.011
Rv1317c.211ya3_STR_B_2001PDBCREDO0.5380.2610.5020.011
Rv1317c.121t46_STI_A_3PDBCREDO0.5920.1890.5010.011
Rv1317c.131e7a_PFL_A_4001PDBCREDO0.5560.2350.5010.011
Rv1317c.211n49_RIT_B_301PDBCREDO0.8550.0090.5010.011
Rv1317c.132bxf_DZP_A_2001PDBCREDO0.6080.1700.5010.011
Rv1317c.133clb_TMQ_B_612PDBCREDO0.6080.1700.5010.011
Rv1317c.212h42_VIA_A_901PDBCREDO0.5560.2350.5010.011
Rv1317c.213el0_1UN_A_201PDBCREDO0.8310.0150.5010.011
Rv1317c.121hwl_FBI_A_2PDBCREDO0.5470.2480.5010.011
Rv1317c.123ut5_LOC_D_502PDBCREDO0.6000.1790.5010.011
Rv1317c.132jap_J01_D_1249PDBCREDO0.5530.2400.5010.011
Rv1317c.121hwl_FBI_C_4PDBCREDO0.5460.2490.5000.011
Similarity to known drug target from sensitive sequence analysis
No drug targets
List of small molecules tested from TIBLE
Data not available
Off-target activity - ligand based from TIBLE
Data not available
Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.
Data not available
STITCH interactions  
No high confidence interactions