SInCRe - Rv0858c

Tuberculist information

Gene name	dapC
Protein function	Probable N-succinyldiaminopimelate aminotransferase DapC (DAP-at)
Functional category(tuberculist)	intermediary metabolism and respiration
Gene location(kb)	953.727
Molecular mass(da)	42209.1
External sites	TB Database TubercuList WebTB

Protein sequence

Number of amino acids : 397

	  		  	1    MTVSRLRPYATTVFAEMSALATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPG   60
			  	61   PGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYD  120
			  	121  SYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATE  180
			  	181  LAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWK  240
			  	241  IGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAA  300
			  	301  GLTEIGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQAS  360
			  	361  QQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPAT

Known structures in the PDB

	PDB ID	2O0R
	Total residue count	822
	Number of chains	2
	Method	X-RAY
	Resolution	2

Number of amino acids : 397

Domains assigned based on sequence.

Mtb Structural proteome models

CHOPIN models

Profile-based domain assignment

Structural/Functional domain family	Pfam acc.no./SCOP ID	Domain Region
Aminotran_1_2	PF00155	24-388

Mtb Structural Proteome models

Model Number	1
Model name	Rv0858c_2o0r_A
Template	2O0R APDB CREDO
Template coverage	1_393
Template Identity(%)	100.0
Model coverage(%)	98.7
Normalized DOPE score	-1.636

Model Number	2
Model name	Rv0858c
Template	1V2D APDB CREDO
Template coverage	2_364
Template Identity(%)	45.3
Model coverage(%)	96.5
Normalized DOPE score	-0.27

Structure Models from Chopin

Model Number	1
Profile	c.67.1.1 Click for model details
zscore	37.68
Residue begin	1
Residue end	397

Binding pockets

STRING

Cytoscape Web will replace the contents of this div with protein-protein interaction network.

Protein interacting with Rv0858c	Gene name	Confidence Score
Rv1202	dapE	0.906
Rv1202	dapE	0.906

Potential ligand/drug binding sites

Protein Model	Pocket Number	Drug Binding Site	PMIN Score	Pvalue PMIN	PMAX Score	Pvalue PMAX
Rv0858c_2o0r_A	13	2fum_MIX_D_3539 PDB CREDO	0.598	0.181	0.579	0.003
Rv0858c_2o0r_A	12	1lhu_EST_A_301 PDB CREDO	0.593	0.187	0.573	0.003
Rv0858c_2o0r_A	13	2y6o_1N1_A_1892 PDB CREDO	0.621	0.154	0.563	0.004
Rv0858c_2o0r_A	13	3v5w_8PR_A_701 PDB CREDO	0.602	0.177	0.563	0.004
Rv0858c_2o0r_A	13	3oez_STI_B_601 PDB CREDO	0.636	0.139	0.558	0.004
Rv0858c_2o0r_A	13	3hec_STI_A_1 PDB CREDO	0.633	0.142	0.556	0.005
Rv0858c_2o0r_A	12	1lhv_NOG_A_301 PDB CREDO	0.647	0.128	0.547	0.005
Rv0858c_2o0r_A	13	1kij_NOV_A_400 PDB CREDO	0.556	0.235	0.538	0.006
Rv0858c_2o0r_A	13	3spk_TPV_A_100 PDB CREDO	0.538	0.261	0.538	0.006
Rv0858c_2o0r_A	13	2jfa_RAL_A_600 PDB CREDO	0.608	0.170	0.534	0.006
Rv0858c_2o0r_A	12	2y00_Y00_A_601 PDB CREDO	0.551	0.243	0.532	0.007
Rv0858c_2o0r_A	12	2y01_Y00_B_601 PDB CREDO	0.549	0.246	0.530	0.007
Rv0858c_2o0r_A	12	2y00_Y00_B_601 PDB CREDO	0.548	0.247	0.529	0.007
Rv0858c_2o0r_A	13	2hyy_STI_B_600 PDB CREDO	0.655	0.120	0.524	0.008
Rv0858c_2o0r_A	12	1etr_MIT_H_1 PDB CREDO	0.598	0.181	0.523	0.008
Rv0858c_2o0r_A	13	1d4s_TPV_A_201 PDB CREDO	0.523	0.284	0.523	0.008
Rv0858c_2o0r_A	13	2fum_MIX_A_539 PDB CREDO	0.599	0.180	0.521	0.008
Rv0858c_2o0r_A	13	4asd_BAX_A_1500 PDB CREDO	0.671	0.105	0.521	0.008
Rv0858c_2o0r_A	13	3tne_RIT_A_401 PDB CREDO	0.588	0.193	0.516	0.009
Rv0858c_2o0r_A	13	1t7j_478_A_200 PDB CREDO	0.625	0.151	0.516	0.009
Rv0858c_2o0r_A	12	2y01_Y00_A_601 PDB CREDO	0.553	0.239	0.515	0.009
Rv0858c_2o0r_A	12	2x9g_LYA_D_1270 PDB CREDO	0.515	0.295	0.515	0.009
Rv0858c_2o0r_A	12	2x9g_LYA_C_1270 PDB CREDO	0.514	0.296	0.514	0.009
Rv0858c_2o0r_A	13	1qkn_RAL_A_600 PDB CREDO	0.549	0.246	0.513	0.009
Rv0858c_2o0r_A	12	2w26_RIV_A_1001 PDB CREDO	0.639	0.136	0.512	0.009
Rv0858c_2o0r_A	12	2zbv_ADN_A_501 PDB CREDO	0.570	0.217	0.512	0.009
Rv0858c_2o0r_A	13	3g5d_1N1_B_1 PDB CREDO	0.679	0.097	0.509	0.009
Rv0858c_2o0r_A	12	1q23_FUA_A_702 PDB CREDO	0.526	0.278	0.508	0.010
Rv0858c_2o0r_A	13	2oiq_STI_A_1001 PDB CREDO	0.634	0.141	0.507	0.010
Rv0858c_2o0r_A	13	3oht_1N1_B_1000 PDB CREDO	0.563	0.227	0.507	0.010
Rv0858c_2o0r_A	13	3gcs_BAX_A_401 PDB CREDO	0.653	0.122	0.507	0.010
Rv0858c_2o0r_A	13	3g5d_1N1_A_1 PDB CREDO	0.676	0.100	0.507	0.010
Rv0858c_2o0r_A	13	2jfa_RAL_B_600 PDB CREDO	0.595	0.184	0.507	0.010
Rv0858c_2o0r_A	13	1err_RAL_A_600 PDB CREDO	0.595	0.185	0.506	0.010
Rv0858c_2o0r_A	13	1err_RAL_B_600 PDB CREDO	0.594	0.186	0.505	0.010
Rv0858c_2o0r_A	13	3k54_1N1_A_1 PDB CREDO	0.602	0.177	0.505	0.010
Rv0858c_2o0r_A	12	1q23_FUA_I_707 PDB CREDO	0.523	0.284	0.505	0.010
Rv0858c_2o0r_A	13	3qlg_1N1_A_601 PDB CREDO	0.673	0.103	0.505	0.010
Rv0858c_2o0r_A	13	2xkw_P1B_B_1475 PDB CREDO	0.579	0.205	0.504	0.010
Rv0858c_2o0r_A	12	2x9g_LYA_B_1270 PDB CREDO	0.539	0.260	0.503	0.010
Rv0858c_2o0r_A	13	1jg2_ADN_A_500 PDB CREDO	0.539	0.260	0.503	0.010
Rv0858c_2o0r_A	13	3qlg_1N1_B_601 PDB CREDO	0.670	0.106	0.502	0.011
Rv0858c_2o0r_A	13	2zva_1N1_A_513 PDB CREDO	0.696	0.084	0.501	0.011

Similarity to known drug target from sensitive sequence analysis

No drug targets

List of small molecules tested from TIBLE

Data not available

Off-target activity - ligand based from TIBLE

Data not available

Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.

Data not available

STITCH interactions

Chemical Name	Confidence score	Molecular Weight
Nchembio861-comp5PubChem	0.978	377.33
glycerolPubChem	0.963	92.0938
pyridoxal phosphatePubChem	0.952	247.142
Na(+)PubChem	0.925	22.9898
chloridePubChem	0.924	35.453
pyridoxamine 5'-phosphatePubChem	0.873	248.173
kynureninePubChem	0.786	208.214