SInCRe - Rv2247

Tuberculist information

Gene name	accD6
Protein function	Acetyl/propionyl-CoA carboxylase (beta subunit) AccD6
Functional category(tuberculist)	lipid metabolism
Gene location(kb)	2520.74
Molecular mass(da)	50136
External sites	TB Database TubercuList WebTB

Protein sequence

Number of amino acids : 473

	  		  	1    MTIMAPEAVGESLDPRDPLLRLSNFFDDGSVELLHERDRSGVLAAAGTVNGVRTIAFCTD   60
			  	61   GTVMGGAMGVEGCTHIVNAYDTAIEDQSPIVGIWHSGGARLAEGVRALHAVGQVFEAMIR  120
			  	121  ASGYIPQISVVVGFAAGGAAYGPALTDVVVMAPESRVFVTGPDVVRSVTGEDVDMASLGG  180
			  	181  PETHHKKSGVCHIVADDELDAYDRGRRLVGLFCQQGHFDRSKAEAGDTDIHALLPESSRR  240
			  	241  AYDVRPIVTAILDADTPFDEFQANWAPSMVVGLGRLSGRTVGVLANNPLRLGGCLNSESA  300
			  	301  EKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRRGAKLLHAFGECTVPRVTLVT  360
			  	361  RKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMGAKAAVGILHKKKLAAAPEHEREALHDQ  420
			  	421  LAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQAPARRGRHKNIPL

Known structures in the PDB

	PDB ID	4FB8
	Total residue count	946
	Number of chains	2
	Method	X-RAY
	Resolution	3

	PDB ID	4G2R
	Total residue count	946
	Number of chains	2
	Method	X-RAY
	Resolution	2.28

	PDB ID	4L6W
	Total residue count	986
	Number of chains	2
	Method	X-RAY
	Resolution	1.95

Number of amino acids : 473

Domains assigned based on sequence.

Mtb Structural proteome models

CHOPIN models

Profile-based domain assignment

Structural/Functional domain family	Pfam acc.no./SCOP ID	Domain Region
Carboxyl_trans	PF01039	15-471

Mtb Structural Proteome models

Model Number	1
Model name	Rv2247
Template	1XNY APDB CREDO
Template coverage	45_530
Template Identity(%)	43.6
Model coverage(%)	99.6
Normalized DOPE score	-0.176

Structure Models from Chopin

Model Number	1
Profile	c.14.1.4 Click for model details
zscore	11.34
Residue begin	11
Residue end	473

Binding pockets

STRING

Cytoscape Web will replace the contents of this div with protein-protein interaction network.

Protein interacting with Rv2247	Gene name	Confidence Score
Rv2246	kasB	0.957
Rv2246	kasB	0.957
Rv2244	acpM	0.942
Rv2245	kasA	0.939
Rv2245	kasA	0.939
Rv3285	accA3	0.927
Rv3285	accA3	0.927
Rv3285	accA3	0.927
Rv3285	accA3	0.927

Potential ligand/drug binding sites

No binding sites identified

Similarity to known drug target from sensitive sequence analysis

No drug targets

List of small molecules tested from TIBLE

Data not available

Off-target activity - ligand based from TIBLE

Data not available

Small molecules involved in protein-protein complex from TIMBAL .Proteins similar to Mtb based on sequence analysis.

Data not available

STITCH interactions

Chemical Name	Confidence score	Molecular Weight
propionyl-CoAPubChem	0.968	823.597
methylmalonyl-CoAPubChem	0.953	867.607
bicarbonatePubChem	0.91	62.0248
(2S)-methylmalonyl-CoAPubChem	0.906	867.607
methylmalonyl-coenzyme APubChem	0.903	867.607
carbon dioxidePubChem	0.902	44.0095
methyl-malonyl-CoAPubChem	0.902	867.607
L-methylmalonyl-CoAPubChem	0.901	867.607
methyl-malonyl-coenzyme APubChem	0.901	862.567
phosphatePubChem	0.9	96.9872
CHEBI:15466PubChem	0.9	867.607
deuteriumPubChem	0.9	2.01588
dihydronicotinamide formycin dinucleotidePubChem	0.9	665.441
alpha-ketobutyratePubChem	0.9	102.089
reduced nicotinamide adenine dinucleotidePubChem	0.9	665.441
Co-APubChem	0.9	767.534
adenosine triphosphatePubChem	0.9	507.181
coenzyme APubChem	0.9	767.534
protiumPubChem	0.9	2.01576
H(+)PubChem	0.9	2.01588
NAD+PubChem	0.9	663.425
n-propionyl-CoAPubChem	0.9	823.597
adenosine diphosphatePubChem	0.9	427.201