AllegroMCODE Plugin Results -Date: 27 Dec, 2013 12:05:00 PM -Network Identifier: Final_uniq_TMScores_above40_pairs.csv -Parameters: Node Scoring: Include Loops:false, Degree Cutoff:2 Cluster Finding: Node Score Cutoff: 0.2, K-Core: 2, Max. Depth from Seed: 100 Post-Processing: From Selection: false, Haircut: true, Fluff: false -Clusters: Id Rank Score Nodes Edges Node IDs 1 1 6 25 150 Rv0101, Rv0769, Rv1865c, Rv1928c, Rv3549c, Rv1144, Rv2940c, Rv2751, Rv1498c, Rv3174, Rv3177, Rv3322c, Rv2601, Rv0687, Rv2039c, Rv0536, Rv1543, Rv3502c, Rv0439c, Rv0761c, Rv1512, Rv3552, Rv0112, Rv0155, Rv0322 2 2 5 34 173 Rv3159c, Rv0851c, Rv1715, Rv2263, Rv2932, Rv2953, Rv3876, Rv1405c, Rv2491, Rv2931, Rv3038c, Rv3224, Rv3724B, Rv1858, Rv3725, Rv3729, Rv1181, Rv3664c, Rv1706c, Rv1800, Rv0242c, Rv2202c, Rv3116, Rv1050, Rv1106c, Rv1350, Rv0447c, Rv1059, Rv3478, Rv0331, Rv0755c, Rv2768c, Rv0570, Rv1175c 3 3 3.894 47 186 Rv1387, Rv1807, Rv3057c, Rv0547c, Rv1836c, Rv3624c, Rv0045c, Rv2608, Rv3309c, Rv0089, Rv0646c, Rv3399, Rv0046c, Rv0291, Rv0770, Rv1663, Rv1856c, Rv0468, Rv2129c, Rv1808, Rv2352c, Rv3144c, Rv1527c, Rv1882c, Rv0104, Rv1753c, Rv2430c, Rv2165c, Rv0147, Rv1544, Rv2590, Rv0751c, Rv0421c, Rv0197, Rv3347c, Rv0388c, Rv1705c, Rv1802, Rv1361c, Rv3558, Rv3125c, Rv1406, Rv1308, Rv1384, Rv1407, Rv1493, Rv2332 4 4 3.333 78 264 Rv3882c, Rv3135, Rv0237, Rv2262c, Rv0187, Rv2623, Rv2946c, Rv2964, Rv3390, Rv3634c, Rv3815c, Rv2026c, Rv0220, Rv0329c, Rv1191, Rv1286, Rv2393, Rv3072c, Rv3420c, Rv3530c, Rv3828c, Rv1996, Rv0070c, Rv3452, Rv2539c, Rv3015c, Rv3232c, Rv1918c, Rv2258c, Rv3665c, Rv0092, Rv0355c, Rv1220c, Rv0981, Rv1027c, Rv2047c, Rv2503c, Rv3266c, Rv3487c, Rv0956, Rv0564c, Rv3560c, Rv2622, Rv3171c, Rv3825c, Rv2780, Rv3395c, Rv1380, Rv0166, Rv2900c, Rv1010, Rv1978, Rv0231, Rv1467c, Rv3140, Rv3570c, Rv3274c, Rv0794c, Rv1529, Rv1683, Rv0286, Rv1787, Rv2356c, Rv1854c, Rv1789, Rv2892c, Rv3539, Rv1124, Rv1530, Rv0565c, Rv0492c, Rv1448c, Rv1933c, Rv2724c, Rv3573c, Rv0860, Rv1281c, Rv1328 5 5 2.837 92 265 Rv2455c, Rv0014c, Rv0015c, Rv0405, Rv0931c, Rv1266c, Rv1746, Rv2933, Rv1661, Rv3239c, Rv3800c, Rv0408, Rv1533, Rv3075c, Rv1136, Rv1832, Rv2691, Rv3919c, Rv1076, Rv3085, Rv2678c, Rv2868c, Rv0293c, Rv0971c, Rv3315c, Rv1603, Rv0074, Rv1400c, Rv1850, Rv1899c, Rv2524c, Rv1153c, Rv2692, Rv3134c, Rv0148, Rv0214, Rv0270, Rv0530, Rv1013, Rv1523, Rv1550, Rv2941, Rv3114, Rv3767c, Rv1662, Rv2051c, Rv0162c, Rv3391, Rv0407, Rv0498, Rv0823c, Rv1915, Rv3313c, Rv3553, Rv2048c, Rv1868, Rv2067c, Rv0834c, Rv3511, Rv0731c, Rv0553, Rv1070c, Rv1248c, Rv0752c, Rv0873, Rv2500c, Rv0784, Rv2606c, Rv1067c, Rv2150c, Rv2769c, Rv1521, Rv0342, Rv1979c, Rv2127, Rv1438, Rv0363c, Rv3504, Rv1141c, Rv0522, Rv1704c, Rv2320c, Rv3253c, Rv2610c, Rv0567, Rv1288, Rv2739c, Rv0697, Rv2852c, Rv0904c, Rv1447c, Rv2577 6 6 1.889 9 17 Rv3792, Rv3887c, Rv0783c, Rv1250, Rv3157, Rv3156, Rv1029, Rv2684, Rv2846c 7 7 1.659 82 138 Rv1513, Rv3585, Rv1075c, Rv3050c, Rv0021c, Rv1838c, Rv2028c, Rv3447c, Rv2261c, Rv3342, Rv0554, Rv3575c, Rv1338, Rv0524, Rv1655, Rv2159c, Rv2317, Rv3113, Rv0073, Rv2004c, Rv3781, Rv2398c, Rv2379c, Rv1237, Rv2399c, Rv2954c, Rv0945, Rv1833c, Rv0695, Rv1427c, Rv2139, Rv3133c, Rv0927c, Rv1245c, Rv1348, Rv2970c, Rv0149, Rv0151c, Rv1325c, Rv2615c, Rv2113, Rv3423c, Rv1672c, Rv0820, Rv1238, Rv1859, Rv2326c, Rv2397c, Rv0551c, Rv1886c, Rv0221, Rv3087, Rv3820c, Rv2506, Rv3295, Rv1984c, Rv2596, Rv2187, Rv2340c, Rv1843c, Rv1399c, Rv0500, Rv0552, Rv0650, Rv2223c, Rv3411c, Rv0800, Rv2686c, Rv0929, Rv2153c, Rv3211, Rv3432c, Rv2285, Rv3734c, Rv1165, Rv1293, Rv2038c, Rv2305, Rv1272c, Rv3663c, Rv1492, Rv2045c 8 8 1.659 41 70 Rv0362, Rv2749, Rv1459c, Rv3331, Rv0041, Rv1066, Rv2439c, Rv2458, Rv2365c, Rv2594c, Rv3065, Rv0480c, Rv1086, Rv0157, Rv2181, Rv2215, Rv3635, Rv0670, Rv1125, Rv3824c, Rv2519, Rv0248c, Rv1192, Rv2296, Rv2643, Rv3886c, Rv1589, Rv2959c, Rv3608c, Rv2453c, Rv1454c, Rv1999c, Rv1872c, Rv0711, Rv2037c, Rv1182, Rv1023, Rv2971, Rv3388, Rv1796, Rv2178c 9 9 1.633 30 53 Rv2966c, Rv2869c, Rv0571c, Rv3574, Rv1941, Rv3670, Rv2381c, Rv3206c, Rv1276c, Rv2172c, Rv2934, Rv1282c, Rv2421c, Rv0234c, Rv3720, Rv0849, Rv1599, Rv1354c, Rv2921c, Rv1751, Rv1869c, Rv0973c, Rv0753c, Rv0629c, Rv0772, Rv1258c, Rv2265, Rv0848, Rv1336, Rv0853c 10 10 1.5 4 6 Rv3244c, Rv3045, Rv3086, Rv3209 11 11 1.5 4 6 Rv0766c, Rv0778, Rv1666c, Rv1777 12 12 1.4 25 36 Rv3772, Rv2879c, Rv2485c, Rv1747, Rv0542c, Rv1681, Rv2813, Rv2897c, Rv3225c, Rv3402c, Rv3667, Rv3350c, Rv1564c, Rv0986, Rv3871, Rv2384, Rv0663, Rv3868, Rv0878c, Rv1917c, Rv3700c, Rv2008c, Rv2589, Rv2426c, Rv1273c 13 13 1.4 5 7 Rv2848c, Rv0632c, Rv1472, Rv2486, Rv1142c 14 14 1.4 10 15 Rv1356c, Rv2170, Rv2584c, Rv1408, Rv2747, Rv1229c, Rv0357c, Rv1188, Rv0555, Rv1349 15 15 1.25 4 5 Rv3183, Rv2745c, Rv0884c, Rv1297 16 16 1.2 5 8 Rv2209, Rv3737, Rv1456c, Rv0517, Rv2158c 17 17 1 3 3 Rv1801, Rv3136, Rv3533c 18 18 1 3 3 Rv3366, Rv1240, Rv1300 19 19 1 3 3 Rv1676, Rv0462, Rv0561c 20 20 1 3 3 Rv0527, Rv3481c, Rv3541c 21 21 1 3 3 Rv1074c, Rv2947c, Rv1180 22 22 1 3 3 Rv2214c, Rv0134, Rv0840c 23 23 1 3 3 Rv1818c, Rv3590c, Rv2396 24 24 1 3 3 Rv1458c, Rv1358, Rv0435c 25 25 1 3 4 Rv3340, Rv2231c, Rv3025c 26 26 1 5 5 Rv1569, Rv3372, Rv0343, Rv3143, Rv0478 27 27 1 3 3 Rv3923c, Rv1905c, Rv1817 28 28 1 3 3 Rv2368c, Rv1329c, Rv1821 29 29 1 4 6 Rv2688c, Rv0060, Rv1028c, Rv0194 30 30 1 3 3 Rv0499, Rv0635, Rv2499c 31 31 1 3 3 Rv1592c, Rv2428, Rv2207 32 32 1 3 3 Rv0067c, Rv3208, Rv3405c 33 33 1 3 3 Rv3320c, Rv1285, Rv0688 34 34 1 3 3 Rv1641, Rv0694, Rv1381