# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # Query - DUF3554 # Accession: PF12074.3 # Description: Domain # Profile length - 339 # Target sequence database - NrichD database # sequence reporting threshold - 0.001 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - >> Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ Alignments for domain = 1 Query_start Query_end Query_coverage(%) Target_start Target_end Bias Accuracy Identity(count) Similarity(count) Bit Score Independent_Evalue Conditional_Evalue 11 338 96% 113 445 6.5 0.96 26(90) 81(276) 265.3 4.9e-76 9e-81 DUF3554 11 lsalpvkslSksivegLlpllskEsnEaaLnallsalgkhlkklteevpedvvkaikkGlaekklp.. 76 +s +++slS+ ++ +++p+l++E++E +L++++s+l++++++lt+evp +++++kk+++ k+++ Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ 113 VSGASSQSLSSAVTVMFIPFLQQEVHEGTLVHAVSVLWQWSNRLTVEVPPALLDWFKKAFTLKTSTsl 180 34444455************************************************************ PP DUF3554 77 lRklWllslgeilwnlanseslqliekflpkllkilkeaasnplpaaqngtlsgayvllalsvtkldk 144 +R+++l++++ +++ e+l+++ +f++ ll++l++a+++++++a ++++a+vll+ +l++ Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ 181 VRHAYLQAMLVAFK----GETLAQAADFTSLLLQTLEKAVAQSSQHALLAEGVAASVLLS----RLAM 240 *************8....******************************************....6777 PP DUF3554 145 ids....kkikfwslaldpkpsfLlsekvysklaseedllwllralealfsalkselaedkvialgqA 208 +++ k ++fw+++ld+k++++++ek++++ a++e+ll+ll+++e+lf ++ ++++++k+++++ A Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ 241 LETqteaKFSSFWNIILDEKKPLFTTEKFLYQ-ANDETLLTLLMLCERLFLDHAHRFNSSKSKMYHYA 307 776777899***********************.*********************************** PP DUF3554 209 liyvllssslstevRkqalqllkkllssnpgv.laesiisalwnwleatelaekes....siestslk 271 ++ +lls+ s+ vRk+a+q+++kllss +g +a+ ++ +l+ ++++++ ++e+ s e t+l Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ 308 TVLTLLSR--SWRVRKKAQQTVRKLLSSLGGAsFARGLLGELRVVVNKHKVLPQEVllseSGELTDLG 373 ********..********************************************************** PP DUF3554 272 fltlvlsaislakseidaaaisdad...lkkllvslLvlahhplipik..nsWigLclrsklDpgelv 334 ++++ ++++ +a+++i+++a +++d +++l++++Lv ahhp+++++ ++W L++ +++ +e++ Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ 374 RSYVPPRVLLEALCVICSTASHWGDpaeVENLAMEILVTAHHPSLVVArpGLWTILLNSMNIKAEEFI 441 ******************************************************************** PP DUF3554 335 rena 338 ++n Uni_1609_Q4SA43|a.118.1.2|94-1324|d1u6gc_ 442 EKNL 445 **97 PP >> Int_1948682|a.118.1.2_1|a.118.1.16_1 Alignments for domain = 1 Query_start Query_end Query_coverage(%) Target_start Target_end Bias Accuracy Identity(count) Similarity(count) Bit Score Independent_Evalue Conditional_Evalue 59 263 60% 23 204 0.0 0.89 11(38) 38(129) 42.1 3.8e-08 6.9e-13 DUF3554 59 pedvvkaikkGlaekklplRklWllslgeilw.nlanseslqliekflpkllkilkeaasnplpaaqngtlsg 130 + + +++++k+l++ ++ +R + +l+ei++ +++++ +++ie+++p l+++l+ +n p++ ++ Int_1948682|a.118.1.2_1|a.118.1.16_1 23 NPQALDLFVKALQDEDADVREACAKALCEICKrLPEEDKDTTVIEDIIPYLMELLQ--DQN--PDVR----YA 87 56889****************************9999******************3..344..4544....66 PP DUF3554 131 ayvllalsvtkldkidskkikfwslaldpkpsfLlsekvysklaseedllwllralealfsalkselaedkvi 203 a+ la + +++l +++ ++L+ +++k++++ed ++a eal + + + ++ + Int_1948682|a.118.1.2_1|a.118.1.16_1 88 AASSLA-------------KIAQILEVKDVEEILV--PILTKMLKDEDEDVRMNAAEALDCIAEVLGQAVLAE 145 666666.............5788*********997..699999***************************9** PP DUF3554 204 algqAliyvllssslstevRkqalqllkkllssnpgv.laesiisalwnwleatelaekes 263 l A++ ++ ++ ++ vR+ a+++l +l ++ +++ + ++ii +wle+ +++ e+ Int_1948682|a.118.1.2_1|a.118.1.16_1 146 GLLPAFVALAKHE--HWRVRRAAVDALPELAEYLNQEyFDQQIIPVMVQWLEDRDDSVREE 204 *************..******************99999**************999876555 PP >> Int_1938065|a.118.1.1_1|a.118.1.2_1 Alignments for domain = 1 Query_start Query_end Query_coverage(%) Target_start Target_end Bias Accuracy Identity(count) Similarity(count) Bit Score Independent_Evalue Conditional_Evalue 19 252 69% 394 612 0.0 0.68 12(42) 42(143) 27.2 0.0013 2.4e-08 DUF3554 19 lSksivegLlpllskEsnEaaLnallsalgkhlkkl.teevpedvvkaikkGlaekklplRklWllslgeilwn 91 ++ v +++l+++ s+++++ ++salgk + + +++++++++k++ k++++ + +R++ ++lg+i + Int_1938065|a.118.1.1_1|a.118.1.2_1 394 GCSDAVPIFIELIED-SHPDVRREAVSALGKMCETFgQQQMDDKFIKFLMKAIEDEDWRVRRAAAQQLGKIAQ- 465 555556667777776.*******************************************************99. PP DUF3554 92 lanseslqliekflpkllkilkeaasnplpaaqngtlsgayvlla.....lsvtkldkids..kkikfwslald 158 + ++ + kf + +++ l e ++a+ + ++ ++l+ l + d+ + + sl++ Int_1938065|a.118.1.1_1|a.118.1.2_1 466 --HVAQDFFPQKFAALCMAWLSEEWWTVRKSAA---ANCHQLYLLkrlleL----CKDTDWdeTCNAIESLINI 530 ..****************999775544444433...556666666432222....2234445455556666666 PP DUF3554 159 pkpsfLlsekvysklaseedllwllralealfsalkselaedkvialgqAliyvllssslstevRkqalqllkk 232 ++p se+ + + + + d +w++ra+ ++++ se + + +Al+ + + s+ vR +++ ++ Int_1938065|a.118.1.1_1|a.118.1.2_1 531 SHPR---SEEWLVR-FVK-DTIWAVRAI---VCQVLSEIINTN---IIDALVEMMKDP--SWWVRYNIAECFER 591 6666...6666666.333.334555555...333333333333...677777777777..77777777777777 PP DUF3554 233 llssnpgv.laesiisalwnw 252 ++ +++ ++e+i+ al ++ Int_1938065|a.118.1.1_1|a.118.1.2_1 592 IVPALDHTkINEDILPALIRL 612 777777766777777666655 PP @@ Number of hits = 3