Query Q4EGI0_LISMN/1-86 Match_columns 86 No_of_seqs 6 out of 6 Neff 2.7 Searched_HMMs 19247 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1tbxa_ a.4.5.48 (A:) Hypothet 96.0 9.5E-05 4.9E-09 44.3 0.0 65 17-85 17-81 (94) 2 d3hhha_ a.4.5.0 (A:) automated 95.9 0.00012 6.1E-09 46.1 0.0 64 21-85 23-90 (104) 3 d3f8ba_ a.4.5.0 (A:) automated 95.9 0.00012 6.3E-09 45.8 0.0 48 38-85 40-91 (105) 4 d3l7wa_ a.4.5.0 (A:) automated 95.8 0.00015 7.6E-09 45.1 0.0 48 38-85 37-87 (106) 5 d1xmaa_ a.4.5.61 (A:) Predicte 95.7 0.00017 9E-09 44.8 0.0 48 38-85 39-90 (103) 6 d2co5a1 a.4.5.48 (A:5-93) STIV 95.4 0.00033 1.7E-08 44.3 0.0 75 9-86 10-84 (89) 7 d2esha1 a.4.5.61 (A:4-117) Hyp 95.4 0.00038 2E-08 44.9 0.0 45 40-84 45-92 (114) 8 d2hzta1 a.4.5.69 (A:4-98) Puta 95.3 0.00041 2.1E-08 42.0 0.0 61 18-84 22-84 (95) 9 d1r7ja_ a.4.5.49 (A:) Sso10a ( 95.3 0.00043 2.3E-08 44.1 0.0 67 5-84 4-70 (90) 10 d1yyva1 a.4.5.69 (A:9-122) Put 95.1 0.00063 3.3E-08 42.8 0.0 47 38-84 49-97 (114) 11 d3df8a_ a.4.5.0 (A:) automated 94.5 0.0015 7.6E-08 41.3 0.0 45 38-84 54-98 (109) 12 d3ctaa1 a.4.5.28 (A:5-89) Ta10 94.5 0.0015 8E-08 36.7 0.0 46 38-84 32-77 (85) 13 d3bjaa_ a.4.5.0 (A:) automated 94.2 0.0021 1.1E-07 39.3 0.0 60 18-84 45-106 (139) 14 d1z7ua1 a.4.5.69 (A:1-108) Hyp 94.2 0.0023 1.2E-07 39.7 0.0 47 38-84 44-92 (108) 15 d2bv6a1 a.4.5.28 (A:5-140) Tra 94.1 0.0026 1.3E-07 39.1 0.0 60 18-84 46-107 (136) 16 d2f2ea1 a.4.5.69 (A:5-146) Hyp 94.1 0.0026 1.3E-07 41.8 0.0 59 19-84 32-91 (142) 17 d1jgsa_ a.4.5.28 (A:) Multiple 94.0 0.0026 1.4E-07 38.8 0.0 61 17-84 45-107 (138) 18 d2fswa1 a.4.5.69 (A:3-104) Hyp 93.9 0.0029 1.5E-07 38.9 0.0 47 38-84 45-93 (102) 19 d1hsja1 a.4.5.28 (A:373-487) S 93.9 0.0031 1.6E-07 39.0 0.0 63 16-85 44-108 (115) 20 d1p4xa1 a.4.5.28 (A:1-125) Sta 93.7 0.0035 1.8E-07 40.1 0.0 70 9-85 39-110 (125) 21 d3jw4a_ a.4.5.0 (A:) automated 93.7 0.0036 1.9E-07 38.3 0.0 69 9-84 35-105 (137) 22 d1z91a1 a.4.5.28 (A:8-144) Org 93.5 0.0043 2.2E-07 37.8 0.0 58 20-84 47-106 (137) 23 d3deua1 a.4.5.28 (A:2-141) Tra 93.4 0.0047 2.4E-07 37.9 0.0 60 18-84 44-105 (140) 24 d3broa1 a.4.5.28 (A:3-137) Tra 93.1 0.006 3.1E-07 37.0 0.0 47 38-84 56-104 (135) 25 d2etha1 a.4.5.28 (A:1-140) Put 93.1 0.0062 3.2E-07 36.8 0.0 47 38-84 57-105 (140) 26 d1s3ja_ a.4.5.28 (A:) Putative 92.8 0.0076 4E-07 36.8 0.0 47 38-84 60-108 (143) 27 d2a61a1 a.4.5.28 (A:5-143) Tra 92.7 0.008 4.1E-07 36.5 0.0 60 18-84 42-103 (139) 28 d3ecoa_ a.4.5.0 (A:) automated 92.5 0.0091 4.7E-07 36.2 0.0 58 20-84 45-104 (137) 29 d2fbha1 a.4.5.28 (A:8-144) Tra 92.5 0.0094 4.9E-07 36.0 0.0 46 38-83 54-101 (137) 30 d1p4xa2 a.4.5.28 (A:126-250) S 92.5 0.0096 5E-07 38.6 0.0 49 37-85 59-109 (125) 31 d2hr3a1 a.4.5.28 (A:2-146) Pro 92.1 0.012 6.2E-07 36.1 0.0 59 19-84 48-108 (145) 32 d1ub9a_ a.4.5.28 (A:) Hypothet 92.1 0.012 6.3E-07 34.8 0.0 58 19-83 29-88 (100) 33 d3echa_ a.4.5.28 (A:) MexR rep 91.5 0.016 8.5E-07 35.6 0.0 70 6-84 39-110 (142) 34 d2fbka1 a.4.5.28 (A:8-179) Tra 91.4 0.018 9.1E-07 37.2 0.0 46 39-84 91-138 (172) 35 d2fxaa1 a.4.5.28 (A:6-167) Pro 91.0 0.021 1.1E-06 36.7 0.0 47 38-84 66-114 (162) 36 d1yg2a_ a.4.5.61 (A:) Hypothet 90.3 0.028 1.5E-06 37.6 0.0 46 38-83 33-82 (178) 37 d2frha_ a.4.5.28 (A:) Pleiotro 90.3 0.029 1.5E-06 36.1 0.0 59 19-84 52-112 (127) 38 d1lj9a_ a.4.5.28 (A:) Transcri 90.2 0.03 1.5E-06 34.2 0.0 47 38-84 54-102 (144) 39 d2fbia1 a.4.5.28 (A:5-140) Pro 89.7 0.036 1.8E-06 33.5 0.0 47 38-84 55-103 (136) 40 d1sfxa_ a.4.5.50 (A:) Hypothet 89.1 0.043 2.2E-06 31.8 0.0 58 18-82 32-90 (109) 41 d2pg4a1 a.4.5.48 (A:1-92) Unch 89.0 0.045 2.3E-06 33.8 0.0 46 39-84 41-87 (92) 42 d1ku9a_ a.4.5.36 (A:) DNA-bind 88.9 0.047 2.4E-06 34.0 0.0 66 9-82 31-96 (151) 43 d2hgca1 a.4.5.77 (A:5-82) Unch 86.8 0.082 4.3E-06 32.1 0.0 66 7-81 1-71 (78) 44 d1fzpd_ a.4.5.28 (D:) Pleiotro 86.2 0.095 4.9E-06 33.0 0.0 70 9-85 38-109 (110) 45 d2p8ta1 a.4.5.72 (A:14-82) Hyp 84.7 0.13 6.7E-06 30.1 0.0 40 39-83 29-68 (69) 46 d1u2wa1 a.4.5.5 (A:12-119) Cad 82.7 0.18 9.4E-06 30.7 0.0 53 17-77 42-94 (108) 47 d1ulya_ a.4.5.58 (A:) Hypothet 74.7 0.5 2.6E-05 32.0 0.0 63 12-81 24-90 (190) 48 d1p6ra_ a.4.5.39 (A:) Penicill 72.3 0.64 3.3E-05 26.9 0.0 65 5-74 10-74 (82) 49 d1oywa1 a.4.5.43 (A:407-516) D 69.2 0.84 4.4E-05 28.3 0.0 48 32-81 51-98 (110) 50 d2obpa1 a.4.5.71 (A:12-92) Put 68.3 0.9 4.7E-05 28.3 0.0 45 38-82 35-79 (81) 51 d2d1ha1 a.4.5.50 (A:1-109) Hyp 67.0 1 5.2E-05 26.1 0.0 52 17-75 33-89 (109) 52 d1y0ua_ a.4.5.5 (A:) Putative 64.4 1.2 6.3E-05 25.7 0.0 35 38-77 54-88 (89) 53 d1okra_ a.4.5.39 (A:) Methicil 63.4 1.3 6.8E-05 27.1 0.0 66 6-76 9-74 (120) 54 d2dk5a1 a.4.5.85 (A:8-85) DNA- 61.2 1.5 8E-05 26.2 0.0 55 4-65 13-67 (78) 55 d1r1ua_ a.4.5.5 (A:) Metal-sen 61.0 1.6 8.1E-05 25.0 0.0 57 12-76 23-79 (94) 56 d2p6ra1 a.4.5.43 (A:404-488) H 60.2 1.6 8.6E-05 26.0 0.0 31 41-77 49-79 (85) 57 d1bm9a_ a.4.5.7 (A:) Replicati 60.0 1.7 8.7E-05 29.6 0.0 35 39-73 50-90 (120) 58 d2g9wa1 a.4.5.39 (A:3-124) Hyp 58.3 1.9 9.7E-05 26.7 0.0 60 6-69 9-68 (122) 59 d1r1ta_ a.4.5.5 (A:) SmtB repr 57.1 2 0.0001 24.8 0.0 37 38-75 47-83 (98) 60 d2gxbb1 a.4.5.19 (B:140-199) Z 55.1 2.3 0.00012 24.3 0.0 53 7-67 2-55 (60) 61 d1xmka1 a.4.5.19 (A:294-366) Z 52.9 2.6 0.00014 25.5 0.0 39 38-78 30-69 (73) 62 d1bjaa_ a.4.5.9 (A:) Transcrip 46.2 4 0.00021 26.4 0.0 40 38-82 42-81 (95) 63 d1mkma1 a.4.5.33 (A:1-75) Tran 45.8 4.1 0.00021 21.6 0.0 49 21-80 21-69 (75) 64 d2p4wa_ a.4.5.64 (A:) Transcri 43.4 4.7 0.00024 27.4 0.0 55 18-79 26-84 (197) 65 d1tw3a1 a.4.5.29 (A:14-98) Car 37.9 6.5 0.00034 22.6 0.0 27 50-80 57-83 (85) 66 d1stza1 a.4.5.51 (A:14-100) He 36.6 7 0.00037 23.5 0.0 28 50-80 48-75 (87) 67 d2axla1 a.4.5.43 (A:1-144) Wer 34.0 8.3 0.00043 25.5 0.0 50 31-82 54-106 (144) 68 d1ixca1 a.4.5.37 (A:1-89) LysR 32.1 9.3 0.00048 21.6 0.0 16 69-84 55-70 (89) 69 d1on2a1 a.4.5.24 (A:2-62) Mang 32.0 9.3 0.00049 19.9 0.0 40 18-64 19-58 (61) 70 d1h9aa1 c.2.1.3 (A:1-181,A:413 28.8 12 0.0006 26.0 0.0 35 25-59 3-37 (196) 71 d1w7pd2 a.4.5.54 (D:450-566) V 28.6 12 0.0006 24.5 0.0 34 33-70 76-109 (117) 72 d2isya1 a.4.5.24 (A:2-64) Iron 28.1 12 0.00063 19.7 0.0 25 39-63 35-59 (63) 73 d2cyya1 a.4.5.32 (A:5-64) Puta 27.6 12 0.00065 19.1 0.0 37 18-61 15-51 (60) 74 d2esna1 a.4.5.37 (A:3-91) Prob 26.0 14 0.00072 20.8 0.0 16 69-84 60-75 (89) 75 d2dtra1 a.4.5.24 (A:4-64) Diph 25.7 14 0.00074 19.3 0.0 40 18-64 19-58 (61) 76 d1sd4a_ a.4.5.39 (A:) Penicill 23.3 17 0.00088 22.3 0.0 52 20-74 20-71 (122) 77 d1dpua_ a.4.5.16 (A:) C-termin 21.8 19 0.00098 20.2 0.0 48 10-59 9-56 (69) 78 d1gkub3 e.10.1.1 (B:499-1054) 20.2 21 0.0011 27.9 0.0 56 20-83 457-512 (556) No 1 >d1tbxa_ a.4.5.48 (A:) Hypothetical protein F93 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]} Probab=95.95 E-value=9.5e-05 Score=44.27 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=46.6 Q Q4EGI0_LISMN/1 17 KSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELKNE 85 (86) Q Consensus 17 ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~~~ 85 (86) +++..++.++.-.+-+ .. ..++.=+-.++-.||..|||.|....+.+| |.+|++|..+++++... T Consensus 17 ~~~~~t~~ei~~~l~~--~~-~vs~~Tv~r~l~~L~~~GlI~~~~~~~~~~-~~LT~~G~~~~~~~~~~ 81 (94) T d1tbxa_ 17 DNEGIATYDLYKKVNA--EF-PMSTATFYDAKKFLIQEGFVKERQERGEKR-LYLTEKGKLFAISLKTA 81 (94) T ss_dssp TCTTCBHHHHHHHHHT--TS-CCCHHHHHHHHHHHHHTTSEEEEEETTEEE-EEECHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHCCCEEEeecCCcee-EEEChhHHHHHHHHHHH Confidence 3444666665443321 11 256666777899999999999988777555 99999999999987653 No 2 >d3hhha_ a.4.5.0 (A:) automated matches {Enterococcus faecalis [TaxId: 1351]} Probab=95.87 E-value=0.00012 Score=46.13 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=45.1 Q Q4EGI0_LISMN/1 21 ATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNK----NNDEKRYYSITLKGDFLLQELKNE 85 (86) Q Consensus 21 ~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~----~~~~~r~Ys~T~kG~~ll~~l~~~ 85 (86) ..--++...+-+. +....|.+=+--++.-||..|+|.+.. .+..++||++|++|...|.++... T Consensus 23 ~~gyei~~~l~~~-~~~~is~~~ly~~L~~Le~~GlI~~~~~~~~~g~~r~~Y~lT~~G~~~l~~~~~~ 90 (104) T d3hhha_ 23 TYGYEITKILNDQ-GFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 90 (104) T ss_dssp BCHHHHHHHHHTT-SCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHc-CCCCCCcCcHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH Confidence 3333444444333 344556666888899999999999875 356788999999999999886644 No 3 >d3f8ba_ a.4.5.0 (A:) automated matches {Lactococcus lactis [TaxId: 416870]} Probab=95.86 E-value=0.00012 Score=45.76 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=38.4 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNK----NNDEKRYYSITLKGDFLLQELKNE 85 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~----~~~~~r~Ys~T~kG~~ll~~l~~~ 85 (86) ..+..=+--++.-||..|+|.+.. .+..++||++|++|...|+++... T Consensus 40 ~i~~~tly~~L~rLe~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~ 91 (105) T d3f8ba_ 40 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 91 (105) T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH T ss_pred ccCccHHHHHHHHHHHCCCeEEEeeccCCCCCcEEEEECHHHHHHHHHHHHH Confidence 455666777889999999999974 566789999999999999887654 No 4 >d3l7wa_ a.4.5.0 (A:) automated matches {Streptococcus mutans [TaxId: 210007]} Probab=95.79 E-value=0.00015 Score=45.08 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=38.9 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKN---NDEKRYYSITLKGDFLLQELKNE 85 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~---~~~~r~Ys~T~kG~~ll~~l~~~ 85 (86) ..++.-+--.+--||..|||.|... +..+++|++|++|...++++... T Consensus 37 ~i~~~tv~~~L~~Le~~GlI~~~~~~~~~r~~~~y~lT~~G~~~~~~~~~~ 87 (106) T d3l7wa_ 37 SIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (106) T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCceEEEECHHHHHHHHHHHHH Confidence 4577777888899999999999764 33567899999999999887543 No 5 >d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]} Probab=95.72 E-value=0.00017 Score=44.78 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=37.7 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNK----NNDEKRYYSITLKGDFLLQELKNE 85 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~----~~~~~r~Ys~T~kG~~ll~~l~~~ 85 (86) .-+..=+-..+.=||..|+|.+.. .+..+++|++|++|...++++... T Consensus 39 ~is~~~ly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~ 90 (103) T d1xmaa_ 39 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 90 (103) T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH T ss_pred CCCcCcHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH Confidence 455666777888899999999984 456788999999999999876543 No 6 >d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]} Probab=95.43 E-value=0.00033 Score=44.31 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=49.4 Q Q4EGI0_LISMN/1 9 ILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELKNEL 86 (86) Q Consensus 9 i~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~~~~ 86 (86) |+-+|....+| ..--++..++.+.-| -..+.+=+--.+.=||..|+|. ...+..+++|++|++|...+++....| T Consensus 10 il~~l~~~~~~-~~gy~I~~~i~~~~g-~~is~gtlYp~L~rLe~~GlI~-~~~~~~rk~Y~lT~~G~~~l~~~~~~~ 84 (89) T d2co5a1 10 ILKVLVINGSR-LEKKRLRSEILKRFD-IDISDGVLYPLIDSLIDDKILR-EEEAPDGKVLFLTEKGMKEFEELHEFF 84 (89) T ss_dssp HHHHHHHTTTE-EEGGGHHHHHHHHHC-CBCCHHHHHHHHHHHHHTTSEE-EECCTTSCEEEECHHHHHHHHHHHHHH T ss_pred HHHHHHhcCCC-CCHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHCCCEE-ecCCCCcEEEEECHHHHHHHHHHHHHH Confidence 33444334444 333444444443333 2355555666778899999999 445677889999999999999887654 No 7 >d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]} Probab=95.36 E-value=0.00038 Score=44.93 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=37.3 Q Q4EGI0_LISMN/1 40 TKNELLYCVYWLEFHGYIKRNK---NNDEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 40 TkNElL~~~YwLE~~gyi~R~~---~~~~~r~Ys~T~kG~~ll~~l~~ 84 (86) |..=|--++..||..|+|.+.. ++..++||++|++|...|+++.. T Consensus 45 s~gsly~~L~~Le~~GlI~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~ 92 (114) T d2esha1 45 HMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILR 92 (114) T ss_dssp CCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHH T ss_pred CCCcHHHHHHHHHHCCCEEEEeecCCCCCceEEEECHHHHHHHHHHHH Confidence 4466777899999999999975 45678899999999999987654 No 8 >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} Probab=95.32 E-value=0.00041 Score=42.00 Aligned_cols=61 Identities=23% Similarity=0.132 Sum_probs=43.8 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) ....+..+|.-.+ ...|+.-+-..+-=||..|+|.|....+..| +|++|++|..+++.+.. T Consensus 22 ~~~~~~~eL~~~l------~~is~~~ls~~L~~L~~~glI~r~~~~~d~r~~~y~LT~~G~~l~~~l~~ 84 (95) T d2hzta1 22 HGKKRTSELKRLM------PNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDM 84 (95) T ss_dssp TCCBCHHHHHHHC------TTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH T ss_pred cCCCCHHHHHHHc------ccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEeCHhHHHHHHHHHH Confidence 3344555555433 2346667777788899999999997665433 59999999999887754 No 9 >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Sulfolobus solfataricus [TaxId: 2287]} Probab=95.29 E-value=0.00043 Score=44.10 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=47.0 Q Q4EGI0_LISMN/1 5 DEKLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 5 ~e~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~~ 84 (86) .-++|..+|..|.+. .+.-++... -+++-.+ +..=+-+|+..|+|.. +... |.+|++|..+++.++. T Consensus 4 ~~eIi~dIL~~~~~G-~~~T~I~~~----anLn~~~---~~kyL~~L~~~GLI~~----~~~~-Y~LT~kG~~~le~l~~ 70 (90) T d1r7ja_ 4 KLEIIQAILEACKSG-SPKTRIMYG----ANLSYAL---TGRYIKMLMDLEIIRQ----EGKQ-YMLTKKGEELLEDIRK 70 (90) T ss_dssp HHHHHHHHHHHHTTC-BCHHHHHHH----HTCCHHH---HHHHHHHHHHTTSEEE----ETTE-EEECHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHH----cCCCHHH---HHHHHHHHHHCCCeEe----CCCE-EEEChhHHHHHHHHHH Confidence 346889999999876 555554322 2322222 5555789999999976 2335 9999999999998865 No 10 >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} Probab=95.08 E-value=0.00063 Score=42.83 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=38.7 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDE--KRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~--~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+..|-..+-.||..|+|.|....+. ..+|++|++|..+++.+.. T Consensus 49 ~is~~~ls~~L~~Le~~GlV~r~~~~~~~r~~~y~LT~~G~~l~~~l~~ 97 (114) T d1yyva1 49 GVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDKVAA 97 (114) T ss_dssp TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHH T ss_pred cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEeCHhHHHHHHHHHH Confidence 4578888889999999999999877653 3469999999999887753 No 11 >d3df8a_ a.4.5.0 (A:) automated matches {Thermoplasma volcanium [TaxId: 50339]} Probab=94.53 E-value=0.0015 Score=41.27 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=37.1 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+..+-..+-.||..|+|.|... ..+ +|.+|++|..+.+.+.. T Consensus 54 ~is~~~ls~~L~~Le~~GlV~r~~~-r~~-~y~LT~~G~~l~~~l~~ 98 (109) T d3df8a_ 54 GISSTILSRRIKDLIDSGLVERRSG-QIT-TYALTEKGMNVRNSLMP 98 (109) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEES-SSE-EEEECHHHHHHHHHHHH T ss_pred cCCHHHHHHHHHHHHHCCCeEEecC-CcE-EEEECccHHHHHHHHHH Confidence 4467778888999999999999988 444 49999999988877653 No 12 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=94.49 E-value=0.0015 Score=36.73 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=36.0 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+.-+=..+==||..|||.|...+.... |++|++|...++++.. T Consensus 32 ~~s~~~v~~~l~~L~~~G~i~~~~~~r~~~-~~lt~~g~~~~~~~~~ 77 (85) T d3ctaa1 32 GISQQSASRIIIDLEKNGYITRTVTKRGQI-LNITEKGLDVLYTEFA 77 (85) T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEETTEEE-EEECHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCCeEE-EEECHHHHHHHHHHHH Confidence 456666666777799999999998554544 9999999999887654 No 13 >d3bjaa_ a.4.5.0 (A:) automated matches {Bacillus cereus [TaxId: 222523]} Probab=94.23 E-value=0.0021 Score=39.33 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=44.6 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) .+..+..+++-.+ ..||.=+-..+=.|+..|||.|.......| ++++|++|..+++++.. T Consensus 45 ~~~~~~~~la~~~-------~i~~~~vs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~g~~~~~~~~~ 106 (139) T d3bjaa_ 45 SGKVSMSKLIENM-------GCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDV 106 (139) T ss_dssp SCSEEHHHHHHHC-------SSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH T ss_pred cCCcCHHHHHHHh-------CCChhhHHHHHHHHHHCCCeeeecCCCCCceeeeeECHHHHHHHHHHHH Confidence 3445666665433 357777788888999999999987665444 68999999999987654 No 14 >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} Probab=94.17 E-value=0.0023 Score=39.75 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=37.5 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDE--KRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~--~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+.-|-..+-.||..|+|.|....+. ...|++|++|..+++.+.. T Consensus 44 ~is~~~ls~~L~~L~~~glV~r~~~~~d~r~~~y~LT~~G~~l~~~l~~ 92 (108) T d1z7ua1 44 GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS 92 (108) T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH T ss_pred ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHH Confidence 3477777788899999999999876543 2349999999999987754 No 15 >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Probab=94.06 E-value=0.0026 Score=39.08 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=45.8 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELKN 84 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~~ 84 (86) .+..++.+|+-.+ ..++.-+-..+-=|+..|+|.|....+.+ +++++|++|..+++++.. T Consensus 46 ~~~~t~~~la~~~-------~~~~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~ 107 (136) T d2bv6a1 46 ESPVNVKKVVTEL-------ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSN 107 (136) T ss_dssp SSEEEHHHHHHHT-------TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTT T ss_pred cCCcCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCeeecCCCCCcceeeeEECHHHHHHHHHHHH Confidence 4556777776544 46777788888899999999998754433 369999999999988754 No 16 >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} Probab=94.05 E-value=0.0026 Score=41.77 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=44.1 Q Q4EGI0_LISMN/1 19 PNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDE-KRYYSITLKGDFLLQELKN 84 (86) Q Consensus 19 ~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~-~r~Ys~T~kG~~ll~~l~~ 84 (86) ...+..+|.-.+ ..|++-|-..+=.||..|+|.|....+. ...|++|++|..++..+.. T Consensus 32 g~~~~~eL~~~l-------~is~~~ls~~L~~Le~~GlV~r~~~~~~r~~~y~LT~~G~~l~~~l~~ 91 (142) T d2f2ea1 32 GLTRFGEFQKSL-------GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVA 91 (142) T ss_dssp TCCSHHHHHHHH-------CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHH T ss_pred CCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEEEecCCCCEEEEEEChhHHHHHHHHHH Confidence 345566665544 3677778888899999999999876543 2359999999999887753 No 17 >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Probab=94.03 E-value=0.0026 Score=38.84 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=47.3 Q Q4EGI0_LISMN/1 17 KSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 17 ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) .++..++.+++-.+ ..++.-+-..+=.|+..|||.|....+.+| ++.+|++|..+++++.. T Consensus 45 ~~~~~t~~ela~~l-------~~~~~~vs~~l~~L~~~G~v~~~~~~~d~R~~~~~lT~~G~~~~~~~~~ 107 (138) T d1jgsa_ 45 CAACITPVELKKVL-------SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ 107 (138) T ss_dssp HHSSBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeEEEEEChHHHHHHHHHHH Confidence 44566666666444 467888889999999999999987754443 68999999999987754 No 18 >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} Probab=93.93 E-value=0.0029 Score=38.86 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=37.4 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~~ 84 (86) ..|++.|-..+==||..|+|.|..+.+.. .+|++|+.|..++..+.. T Consensus 45 gis~~~ls~~L~~Le~~GlV~r~~~~~~~~~~~y~LT~~G~~l~~~l~~ 93 (102) T d2fswa1 45 GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDE 93 (102) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEEChhHHHHHHHHHH Confidence 34777788888889999999999777643 359999999998877653 No 19 >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Probab=93.88 E-value=0.0031 Score=39.04 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=44.3 Q Q4EGI0_LISMN/1 16 VKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNND--EKRYYSITLKGDFLLQELKNE 85 (86) Q Consensus 16 ~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~--~~r~Ys~T~kG~~ll~~l~~~ 85 (86) ..++..++.+++-.+ +.++.=+-..+==||..|||.|...-+ -..++++|++|..+++++... T Consensus 44 ~~~~~~t~~~ia~~l-------~~~~~tvs~~l~~L~~~g~I~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 108 (115) T d1hsja1 44 SESNEISSKEIAKCS-------EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISE 108 (115) T ss_dssp CSCSEEEHHHHHHSS-------CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHH T ss_pred ccCCCcCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHH Confidence 366666766666543 345555666677799999998865433 344689999999999887643 No 20 >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=93.75 E-value=0.0035 Score=40.09 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=49.8 Q Q4EGI0_LISMN/1 9 ILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKNE 85 (86) Q Consensus 9 i~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~~ 85 (86) ++.+|.-+..+..++.+++-.+ ..++.=+-..+-=||..|||.|....+..| ++++|++|..+++++... T Consensus 39 iL~~L~~~~~~~~t~~ei~~~l-------~~s~stvt~~i~~Le~kglI~r~~~~~D~R~~~i~LTe~G~~~i~~~~~~ 110 (125) T d1p4xa1 39 LLTYLFHQQENTLPFKKIVSDL-------CYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTL 110 (125) T ss_dssp HHHHHHSCSCSEEEHHHHHHHS-------SSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHH T ss_pred HHHHHHhccCCCcCHHHHHHHH-------CCCHhHHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHH Confidence 4444443335667777776644 456666777788899999999877655544 578999999998887643 No 21 >d3jw4a_ a.4.5.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 1488]} Probab=93.73 E-value=0.0036 Score=38.31 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=41.5 Q Q4EGI0_LISMN/1 9 ILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNND--EKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 9 i~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~--~~r~Ys~T~kG~~ll~~l~~ 84 (86) ++.+|....++..++.+|+-.+ ..||.-+-..+=.|+..|||.|..... -.+++.+|++|..+++++.. T Consensus 35 il~~l~~~~~~~~t~~ela~~~-------~is~~~vs~~l~~L~~~g~i~~~~~~~d~R~~~l~lT~~g~~~~~~~~~ 105 (137) T d3jw4a_ 35 MIGYIYENQESGIIQKDLAQFF-------GRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNN 105 (137) T ss_dssp HHHHHHHHTTTCCCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCcCHHHHHHHH-------CCCcchHHHHHHHHHHCCCEEeecCCCCcceeEeEECHHHHHHHHHHHH Confidence 3444433333555666665543 356777888889999999999976443 33458999999999887654 No 22 >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Probab=93.53 E-value=0.0043 Score=37.82 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=43.6 Q Q4EGI0_LISMN/1 20 NATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELKN 84 (86) Q Consensus 20 ~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~~ 84 (86) ..+..+++-.+ ..||.-+-..+-.||..|||.|....+.. ++|.+|++|..+++.+.. T Consensus 47 ~~~~~ela~~l-------~~~~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~ 106 (137) T d1z91a1 47 TLTVKKMGEQL-------YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVD 106 (137) T ss_dssp EEEHHHHHHTT-------TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTTT T ss_pred CcCHHHHHHHh-------CCCcccHHHHHHHHHHCCCEEeeCCCCCCceEEEEECHHHHHHHHHHHH Confidence 34555555433 57888888999999999999997653333 358999999999887753 No 23 >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Probab=93.44 E-value=0.0047 Score=37.91 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=41.9 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDE--KRYYSITLKGDFLLQELKN 84 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~--~r~Ys~T~kG~~ll~~l~~ 84 (86) ++..++.+|.-.+ +.++.-+-..+=.|+..|||.|...... .++|++|++|..+++++.. T Consensus 44 ~~~~t~~ela~~l-------~i~~~~is~~l~~L~~~G~i~~~~~~~d~R~~~~~lT~~G~~~~~~~~~ 105 (140) T d3deua1 44 PPDQSQIQLAKAI-------GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE 105 (140) T ss_dssp CSSEEHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH T ss_pred CCCCCHHHHHHHH-------CCChhHHHHHHHHHHHCCCEeeeCCCCCCceeeeeECHHHHHHHHHHHH Confidence 3446666666544 4577777788899999999999775444 3568999999999887754 No 24 >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Probab=93.12 E-value=0.006 Score=37.05 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=37.8 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) +.+|.=+-..+=.|+..|||.|.......| ++.+|++|..+++++.. T Consensus 56 ~i~~~tvs~~l~~L~~~g~i~~~~~~~d~R~~~~~lT~~G~~~~~~~~~ 104 (135) T d3broa1 56 SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILS 104 (135) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHH T ss_pred CCchhhHHHHHHHHHHCCCEEeecCCCCcceeEeEECHHHHHHHHHHHH Confidence 457777888899999999999987655443 68999999998887643 No 25 >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Probab=93.08 E-value=0.0062 Score=36.80 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=36.2 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKN--NDEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~--~~~~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+.-+-..+=-|+..|||.|... +.-.+++++|++|..+++.+.. T Consensus 57 ~~s~~~vs~~l~~L~~~g~i~~~~~~~d~r~~~i~lT~~G~~~~~~~~~ 105 (140) T d2etha1 57 STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILS 105 (140) T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCccccCeeEEEECHHHHHHHHHHHH Confidence 4566667777888999999999654 3334469999999999887654 No 26 >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Probab=92.81 E-value=0.0076 Score=36.78 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=36.0 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) ..++.-+-..+==||..|||.|.......| ++++|++|..+++.+.. T Consensus 60 ~~~~~~v~~~l~~L~~~G~v~~~~~~~d~R~~~~~lT~~g~~~~~~~~~ 108 (143) T d1s3ja_ 60 EVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLA 108 (143) T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHH T ss_pred CCCHhHHHHHHHHHHHCCCEeeccCCCCCceeeeeECHHHHHHHHHHHH Confidence 456666777777899999999986544433 68999999999887543 No 27 >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Probab=92.74 E-value=0.008 Score=36.53 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=43.1 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELKN 84 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~~ 84 (86) .+..++.+++-.+ ..+++-+-..+-=||..|||.|....+.+ .++++|++|..+++++.. T Consensus 42 ~~~~t~~ela~~l-------~~~~~~vs~~l~~L~~~g~i~~~~~~~d~R~~~~~lT~~g~~~~~~~~~ 103 (139) T d2a61a1 42 EGPKRPGELSVLL-------GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIE 103 (139) T ss_dssp HCCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH T ss_pred cCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCeeecCCCCCCCeeeeEECHhHHHHHHHHHH Confidence 4455666665544 46666677777889999999998665433 358999999999887653 No 28 >d3ecoa_ a.4.5.0 (A:) automated matches {Staphylococcus aureus [TaxId: 158878]} Probab=92.54 E-value=0.0091 Score=36.17 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=40.8 Q Q4EGI0_LISMN/1 20 NATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNN--DEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 20 ~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~--~~~r~Ys~T~kG~~ll~~l~~ 84 (86) ..++.+++-.+ +.++.-+-..+=.||..|||.|.... .-.+++++|++|..+++++.. T Consensus 45 ~~t~~ela~~l-------~~~~~~~s~~l~~L~~~g~i~~~~~~~d~r~~~~~lT~~g~~~~~~~~~ 104 (137) T d3ecoa_ 45 GLTQNDIAKAL-------QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS 104 (137) T ss_dssp CEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHH T ss_pred CcCHHHHHHHH-------CCCchhHHHHHHHHHHCCCEeecCCCCCcceeeeeECHHHHHHHHHHHH Confidence 44555554443 35566677778889999999986543 334569999999999987654 No 29 >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Probab=92.49 E-value=0.0094 Score=35.97 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=36.0 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELK 83 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~ 83 (86) ..+++-+-..+==|+..|||.|......+ ++|.+|++|..+++++. T Consensus 54 ~i~~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~ 101 (137) T d2fbha1 54 GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 101 (137) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH T ss_pred CCCcchHHHHHHHHHHCCCEEeecCccccceeeeEECHHHHHHHHHHH Confidence 35677777777889999999997654333 47999999999988764 No 30 >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=92.46 E-value=0.0096 Score=38.58 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=39.8 Q Q4EGI0_LISMN/1 37 RNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKNE 85 (86) Q Consensus 37 ~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~~ 85 (86) -+.+++-+-..+==||..|||.|....+.+| +.++|++|..+++++..+ T Consensus 59 l~i~~s~vs~~i~~Le~kGlI~r~~~~~DrR~~~I~LT~~G~~~~~~l~~~ 109 (125) T d1p4xa2 59 IHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQ 109 (125) T ss_dssp SSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHH T ss_pred HCCCHhHHHHHHHHHHHCCCEEEeCCCCCCceEEEEECHHHHHHHHHHHHH Confidence 3567777777788899999999998777766 578999999998887653 No 31 >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Probab=92.10 E-value=0.012 Score=36.07 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=38.5 Q Q4EGI0_LISMN/1 19 PNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELKN 84 (86) Q Consensus 19 ~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~~ 84 (86) +..+..+|+-.+ ..++.-+-..+==|+..|||.|....+.+ +++.+|++|..+++++.. T Consensus 48 ~~~t~~ela~~l-------~~~~~~vs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 108 (145) T d2hr3a1 48 GDVTPSELAAAE-------RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRA 108 (145) T ss_dssp SCBCHHHHHHHT-------TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHH T ss_pred CCCCHHHHHHHh-------CCChhhHHHHHHHHHHCCCeEecCCCCCCceeeeEECHHHHHHHHHHHH Confidence 444555555443 34555566666779999999996544333 369999999999988754 No 32 >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Pyrococcus horikoshii [TaxId: 53953]} Probab=92.09 E-value=0.012 Score=34.76 Aligned_cols=58 Identities=19% Similarity=0.128 Sum_probs=38.3 Q Q4EGI0_LISMN/1 19 PNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDE--KRYYSITLKGDFLLQELK 83 (86) Q Consensus 19 ~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~--~r~Ys~T~kG~~ll~~l~ 83 (86) +..+..+++-.+ ..|+.-+-..+==||..|+|.+...... .++|++|++|...++++. T Consensus 29 ~~~~~~ela~~l-------~~s~~tvs~~l~~L~~~GlI~~~~~~~~~~~~~~~lt~~g~~~~~~~~ 88 (100) T d1ub9a_ 29 RKAPFSQIQKVL-------DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100) T ss_dssp SEEEHHHHHHHT-------TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH T ss_pred CCCcHHHHHHHh-------CcCHHHHHHHHHHHHHCCCEEEeecCCCCceEEEEEChhhHHHHHHHH Confidence 445555554433 3445556666677999999998644322 336999999998887654 No 33 >d3echa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Probab=91.52 E-value=0.016 Score=35.56 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=39.3 Q Q4EGI0_LISMN/1 6 EKLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELK 83 (86) Q Consensus 6 e~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~ 83 (86) +-.++.+|.. ++..++.+|+-.+ ..+|.=+-..+==|+..|||.|......+ +|+++|++|...++.+. T Consensus 39 ~~~il~~l~~--~~~~t~~~la~~l-------~~~~~~vs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (142) T d3echa_ 39 DVHVLKLIDE--QRGLNLQDLGRQM-------CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142) T ss_dssp HHHHHHHHHH--TTTCCHHHHHHHH-------C---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH T ss_pred HHHHHHHHHh--cCCcCHHHHHHHh-------CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH Confidence 3344444433 2345556555443 34555555566669999999997664444 36899999999988765 Q Q4EGI0_LISMN/1 84 N 84 (86) Q Consensus 84 ~ 84 (86) . T Consensus 110 ~ 110 (142) T d3echa_ 110 L 110 (142) T ss_dssp H T ss_pred H Confidence 4 No 34 >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Probab=91.39 E-value=0.018 Score=37.22 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=31.7 Q Q4EGI0_LISMN/1 39 FTKNELLYCVYWLEFHGYIKRNKNNDEK--RYYSITLKGDFLLQELKN 84 (86) Q Consensus 39 ~TkNElL~~~YwLE~~gyi~R~~~~~~~--r~Ys~T~kG~~ll~~l~~ 84 (86) .|+.-+=..+==||..|||.|......+ +++.+|++|..+++++.. T Consensus 91 i~~s~vs~~l~~L~~~GlV~r~~~~~d~R~~~l~lT~~G~~~~~~~~~ 138 (172) T d2fbka1 91 ISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLP 138 (172) T ss_dssp CCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHH T ss_pred CCHhHHHHHHHHHHHCcCEEeCCCCCCCCeeeeEECHHHHHHHHHHHH Confidence 4455555556669999999998765443 368999999999988653 No 35 >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Probab=90.99 E-value=0.021 Score=36.72 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=34.0 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNN--DEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~--~~~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+.-+-..+==||..|||.|..+. .-.+++.+|++|..+++++.. T Consensus 66 ~~s~~~vs~~l~~Le~~GlI~r~~~~~d~R~~~i~LT~~G~~~~~~~~~ 114 (162) T d2fxaa1 66 VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 114 (162) T ss_dssp TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH T ss_pred CCCHhHHHHHHHHHHHCCCEEEeCCCCCCCeeEEEECHHHHHHHHHHHH Confidence 45566666677789999999996543 334569999999999887654 No 36 >d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]} Probab=90.32 E-value=0.028 Score=37.60 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=34.1 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKN----NDEKRYYSITLKGDFLLQELK 83 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~----~~~~r~Ys~T~kG~~ll~~l~ 83 (86) +.|..-+-.++=-||..|+|.+... +..++.|++|++|..-|++.- T Consensus 33 ~~s~~~iY~~L~~Le~~glI~~~~~~~~~~~~rk~Y~iT~~G~~~l~~wl 82 (178) T d1yg2a_ 33 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWF 82 (178) T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHH T ss_pred CCCCCcHHHHHHHHHHCCCEEEEeeccCCCCCCeEEEEChHHHHHHHHHH Confidence 4567778888889999999998773 245678999999998887643 No 37 >d2frha_ a.4.5.28 (A:) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=90.28 E-value=0.029 Score=36.08 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=41.8 Q Q4EGI0_LISMN/1 19 PNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 19 ~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) +..++.+++-. -..++.-+...+==||..|||.|......+| +.++|++|..+++++.. T Consensus 52 ~~~t~~eia~~-------~~i~~s~vs~~v~~L~~~GlI~r~~~~~D~R~~~i~LT~~G~~~i~~l~~ 112 (127) T d2frha_ 52 KEYYLKDIINH-------LNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLS 112 (127) T ss_dssp SEEEHHHHHHH-------SSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHH T ss_pred CCcCHHHHHHH-------HCCCHhHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHHH Confidence 45555555433 2445555666677799999999976654444 68999999999888754 No 38 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Probab=90.17 E-value=0.03 Score=34.19 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=36.0 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~ 84 (86) ..|++-+-..+==||..|||.|.......| ++++|++|..+++++.. T Consensus 54 ~~~~~~vs~~l~~L~~~Gli~~~~~~~d~R~~~l~lT~~G~~~~~~~~~ 102 (144) T d1lj9a_ 54 KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVR 102 (144) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCcCeeeeEECHHHHHHHHHHHH Confidence 456777777788899999999886553332 48899999999887653 No 39 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Probab=89.69 E-value=0.036 Score=33.52 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=36.3 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDE--KRYYSITLKGDFLLQELKN 84 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~--~r~Ys~T~kG~~ll~~l~~ 84 (86) ..|+.-+-..+-=|+..|||.|...... .+++.+|++|..+++++.. T Consensus 55 ~~~~~~vs~~l~~L~~~glv~~~~~~~d~r~~~~~lT~~G~~~~~~~~~ 103 (136) T d2fbia1 55 CILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSG 103 (136) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCeeecCCCCCcceeeeeECHHHHHHHHHHHH Confidence 4567777778888999999998654333 3469999999999887653 No 40 >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=89.12 E-value=0.043 Score=31.82 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=41.0 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITL-KGDFLLQEL 82 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~-kG~~ll~~l 82 (86) ++..++.+++-.+ +.|++-+-..+-.|+..|+|.|..-....++|.+|. .+..+++.+ T Consensus 32 ~~~~t~~~la~~l-------~~s~~tv~~~l~~L~~~glI~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (109) T d1sfxa_ 32 RGGMRVSEIAREL-------DLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109) T ss_dssp HCCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH T ss_pred cCCCCHHHHHHHh-------CCCHHHHHHHHHHHHHCCCEEEEecCCCeeEEEEecCCHHHHHHHH Confidence 4455566555443 688999999999999999999986455566688885 444444443 No 41 >d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1 {Aeropyrum pernix [TaxId: 56636]} Probab=89.01 E-value=0.045 Score=33.80 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=33.2 Q Q4EGI0_LISMN/1 39 FTKNELLYCVY-WLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELKN 84 (86) Q Consensus 39 ~TkNElL~~~Y-wLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~~ 84 (86) .|+.=+-..+= =||..|||.|.....-++..++|++|..+++++.. T Consensus 41 ~s~~tvs~~l~~~Le~~glI~~~~~DrR~~~i~LT~~G~~~~~~~~~ 87 (92) T d2pg4a1 41 VSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEK 87 (92) T ss_dssp CCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHH T ss_pred CCHhHHHHHHHHHHHHCcCEEecCCCCceEEEEECHHHHHHHHHHHH Confidence 34444555566 79999999977333334569999999999998764 No 42 >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Methanococcus jannaschii [TaxId: 2190]} Probab=88.87 E-value=0.047 Score=33.99 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=44.5 Q Q4EGI0_LISMN/1 9 ILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQEL 82 (86) Q Consensus 9 i~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l 82 (86) ++.+|.-+..| .++.+++-.+ ..+|.=+-..+=-|+..|||.|.......|.|-+|.+|...++++ T Consensus 31 iL~~l~~~~~~-~t~~eLa~~l-------~i~~stvsr~l~~L~~~GlI~~~~~~~d~r~~~~~~~~~~~~~~~ 96 (151) T d1ku9a_ 31 VYAILYLSDKP-LTISDIMEEL-------KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDI 96 (151) T ss_dssp HHHHHHHCSSC-EEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHHH T ss_pred HHHHHHHcCCC-CCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEEeecCCCcceEEEeCCcHHHHHHH Confidence 44555433433 7777777655 455666666777899999999887755556677777886655544 No 43 >d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus subtilis [TaxId: 1423]} Probab=86.79 E-value=0.082 Score=32.14 Aligned_cols=66 Identities=29% Similarity=0.298 Sum_probs=43.0 Q Q4EGI0_LISMN/1 7 KLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNN--DEKRYYS---ITLKGDFLLQE 81 (86) Q Consensus 7 ~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~--~~~r~Ys---~T~kG~~ll~~ 81 (86) |++|.||.--.+.. ..+|.+.+ ..+...+...+-=|+..|||+--..- ....||+ +|.+|..+|++ T Consensus 1 kiiy~IL~~l~~g~---~~~s~~~l------~Ise~~~~~il~~L~~~GyI~G~~~~~~~~~~~~~~~~IT~~G~eyL~e 71 (78) T d2hgca1 1 KLRYAILKEIFEGN---TPLSENDI------GVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKE 71 (78) T ss_dssp CCHHHHHHHHHHHC---SCCCHHHH------TSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHH T ss_pred ChHHHHHHHHHcCC---cCCCHHHc------CcCHHHHHHHHHHHHHCCCeeeEEEEecCceEeccCccCCHHHHHHHHH Confidence 57788888777444 33443333 33455566667778888888644322 3556678 99999999875 No 44 >d1fzpd_ a.4.5.28 (D:) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=86.18 E-value=0.095 Score=33.05 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=41.4 Q Q4EGI0_LISMN/1 9 ILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR--YYSITLKGDFLLQELKNE 85 (86) Q Consensus 9 i~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r--~Ys~T~kG~~ll~~l~~~ 85 (86) ++..|........++.+++-.+ ..++.-+-..+==||..|||.|....+..| +-++|++|...++++-++ T Consensus 38 vL~~L~~~~~~~~~~~eLa~~l-------~~~~~~vt~~i~~Le~kG~I~r~~~~~D~R~v~i~lT~~g~~~i~~l~~~ 109 (110) T d1fzpd_ 38 VLTYISENKEKEYYLKDIINHL-------NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSR 109 (110) T ss_dssp HGGGCSGGGHHHHHHHTC-----------------CHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHhCCCCCcCHHHHHHHH-------CCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHhh Confidence 3344433333344555554332 344555566666799999999988877777 347899999999887654 No 45 >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} Probab=84.65 E-value=0.13 Score=30.10 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=31.0 Q Q4EGI0_LISMN/1 39 FTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELK 83 (86) Q Consensus 39 ~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~ 83 (86) .|...+=..+-=|+..|||.+.. .. ..+|++|..+++++. T Consensus 29 vs~~sv~~~l~~L~~~GlI~~~~----~g-i~LT~~G~~~~~~i~ 68 (69) T d2p8ta1 29 LGEGSVRTLLRKLSHLDIIRSKQ----RG-HFLTLKGKEIRDKLL 68 (69) T ss_dssp CCHHHHHHHHHHHHHTTSEEEC------C-EEECHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCEEecC----CC-eEECHHHHHHHHHHh Confidence 56666666777899999999872 22 789999999998875 No 46 >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Probab=82.74 E-value=0.18 Score=30.70 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=35.5 Q Q4EGI0_LISMN/1 17 KSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDF 77 (86) Q Consensus 17 ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ 77 (86) .+...+..++.-.+ ..|+.-+-..+.-|+..|+|.+...+.. +||++|.++-. T Consensus 42 ~~~~~t~~ela~~l-------~is~~tvs~hL~~L~~~gli~~~~~~r~-~~y~l~~~~~~ 94 (108) T d1u2wa1 42 QDEELCVCDIANIL-------GVTIANASHHLRTLYKQGVVNFRKEGKL-ALYSLGDEHIR 94 (108) T ss_dssp HSSCEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEC----C-CEEEESCHHHH T ss_pred HCCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEEeCCE-EEEEEChHHHH Confidence 44444555544333 3588888899999999999999876665 45999998754 No 47 >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} Probab=74.74 E-value=0.5 Score=32.00 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=44.1 Q Q4EGI0_LISMN/1 12 VLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRN---KNND-EKRYYSITLKGDFLLQE 81 (86) Q Consensus 12 VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~---~~~~-~~r~Ys~T~kG~~ll~~ 81 (86) ||....+...++.+++-.+ ..|++=+-..+-=||..|+|.+. ..+. ..+||.+|.+|..+-.. T Consensus 24 IL~lL~~~~~T~~EIA~~L-------gis~stVs~hL~~Lee~GlI~~~~~~~~gr~~~~~y~lt~~~~~l~~~ 90 (190) T d1ulya_ 24 ILKLLRNKEMTISQLSEIL-------GKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYINLY 90 (190) T ss_dssp HHHHHTTCCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEECSC T ss_pred HHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEEecccccCCceeEEEEeccceEEEecc Confidence 3333344557888888766 56777788899999999999987 2222 26779888887665443 No 48 >d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Probab=72.28 E-value=0.64 Score=26.92 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=44.0 Q Q4EGI0_LISMN/1 5 DEKLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLK 74 (86) Q Consensus 5 ~e~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~k 74 (86) .+..|+++|.... ..+..++.-.+-. -+..+++=+-..+=-|+..|+|.|...|-..+||..-.+ T Consensus 10 ~e~~Il~~l~~~~--~~t~~ei~~~l~~---~~~~~~sTv~~~L~rL~~kG~i~r~~~gr~~~y~p~~~~ 74 (82) T d1p6ra_ 10 AELEVMKVIWKHS--SINTNEVIKELSK---TSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTPNIDE 74 (82) T ss_dssp HHHHHHHHHHTSS--SEEHHHHHHHHHH---HSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESCSS T ss_pred HHHHHHHHHHhCC--CcCHHHHHHHHhc---ccCCcHhHHHHHHHHHHHCCCEEEEecCCcEEEEEecCH Confidence 4556777775433 5566666655432 145677777788889999999999998877775544333 No 49 >d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=69.20 E-value=0.84 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=38.4 Q Q4EGI0_LISMN/1 32 QFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQE 81 (86) Q Consensus 32 ~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~ 81 (86) -|+....+|++++-.-+-+|...|||.... +.=....+|++|..+|+. T Consensus 51 ~yG~gk~~s~~~~~~li~~Li~~g~L~~~~--~~y~~l~lt~~g~~~L~g 98 (110) T d1oywa1 51 VYGMGRDKSHEHWVSVIRQLIHLGLVTQNI--AQHSALQLTEAARPVLRG 98 (110) T ss_dssp TTTTTTTSCHHHHHHHHHHHHHTTSEEEEG--GGTTEEEECGGGHHHHHT T ss_pred cCCCCCCCCHHHHHHHHHHHHHCCCceecc--CCCceEEECHHHHHHHCC Confidence 367777899999999999999999999863 221237899999998874 No 50 >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} Probab=68.31 E-value=0.9 Score=28.30 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=35.6 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQEL 82 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l 82 (86) ..+.+=|-..+=+||..|++.|.-..+..+.=.+|++|..++++| T Consensus 35 ~~s~StLsR~L~~Le~~Glv~~~~~~dgRg~a~LT~~G~~~~~~l 79 (81) T d2obpa1 35 QLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQL 79 (81) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCeeeecCCCCcceeEECHhHHHHHHHh Confidence 456677888899999999999766655554467999999988775 No 51 >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Probab=67.03 E-value=1 Score=26.10 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=35.0 Q Q4EGI0_LISMN/1 17 KSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRN-----KNNDEKRYYSITLKG 75 (86) Q Consensus 17 ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~-----~~~~~~r~Ys~T~kG 75 (86) +.+..+..+++-.+ +.+++-+-..+-.|+..|+|.|. ..|...++|.++.++ T Consensus 33 ~~~~~t~~eLa~~l-------~is~~tv~~~l~~L~~~g~I~~~~~~~~~~g~~~~~~~~~~~~ 89 (109) T d2d1ha1 33 IEKPITSEELADIF-------KLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNI 89 (109) T ss_dssp HCSCEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTH T ss_pred hCCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEeecCccCCCCCCceEEEeChhH Confidence 34556677777666 56777888888999999999999 334444566664443 No 52 >d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=64.41 E-value=1.2 Score=25.69 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=25.9 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDF 77 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ 77 (86) ..|+.=+-.-+-=|| .|+|.+...+. |.+|+.|.. T Consensus 54 ~is~~tv~~hL~~Le-~g~v~~~~~~~----~~lT~~G~~ 88 (89) T d1y0ua_ 54 SLSKKQLDYHLKVLE-AGFCIERVGER----WVVTDAGKI 88 (89) T ss_dssp TCCHHHHHHHHHHHH-HTTSEEEETTE----EEECTTTCC T ss_pred CcCHHHHHHHHHHHH-cCCcEEEECCe----EEECcccCc Confidence 345555666677787 99998876544 999999975 No 53 >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} Probab=63.42 E-value=1.3 Score=27.07 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=42.8 Q Q4EGI0_LISMN/1 6 EKLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGD 76 (86) Q Consensus 6 e~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~ 76 (86) +..++++|-.. +..++.++.-.+-.- +..+++=+--.+-=|+..|||.|...+....|+....++. T Consensus 9 e~~vl~~Lw~~--~~~t~~ei~~~l~~~---~~~~~~Tv~~~l~rL~~kg~v~r~~~~r~~~y~~~i~~~~ 74 (120) T d1okra_ 9 EWEVMNIIWMK--KYASANNIIEEIQMQ---KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESD 74 (120) T ss_dssp HHHHHHHHHHH--SSEEHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHH T ss_pred HHHHHHHHHhC--CCcCHHHHHHHhhcc---cCCchhhHHHHHHHHHHCCCEEEEecCCcEEEEeCCCHHH Confidence 44455555433 356666666554331 4556777777788899999999999887777554444443 No 54 >d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]} Probab=61.17 E-value=1.5 Score=26.24 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=40.2 Q Q4EGI0_LISMN/1 4 PDEKLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDE 65 (86) Q Consensus 4 ~~e~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~ 65 (86) |++.++|+++..+.+.-....+|.... +.+.+.+=.++-=||..|+|+|.+.... T Consensus 13 ~~e~lV~~~I~~~g~~GI~~keL~~~~-------~l~~~tvtkiLk~Le~k~lIk~v~sv~~ 67 (78) T d2dk5a1 13 NQEKLVYQIIEDAGNKGIWSRDVRYKS-------NLPLTEINKILKNLESKKLIKAVKSVAA 67 (78) T ss_dssp SSHHHHHHHHHHHCTTCEEHHHHHHHT-------TCCHHHHHHHHHHHHHTTSEEEECCSSC T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHh-------CCCHHHHHHHHHHHHHCCCEEEecCCCC Confidence 456677777776666556666665543 4566778889999999999999997765 No 55 >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Probab=60.99 E-value=1.6 Score=25.02 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=37.0 Q Q4EGI0_LISMN/1 12 VLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGD 76 (86) Q Consensus 12 VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~ 76 (86) ||....+...+..+++-.+ ..|+.-+-..+==|+..|+|.+...+.... |++|..+- T Consensus 23 Il~~l~~~~~~~~ela~~l-------~is~~tvs~~L~~L~~~glv~~~~~g~~~~-y~l~~~~~ 79 (94) T d1r1ua_ 23 IMELLSVSEASVGHISHQL-------NLSQSNVSHQLKLLKSVHLVKAKRQGQSMI-YSLDDIHV 79 (94) T ss_dssp HHHHHHHCCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEEETTEEE-EEESSHHH T ss_pred HHHHHHHCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE-EEEChHHH Confidence 3333333445555554332 245666666777799999999988766555 99998764 No 56 >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Probab=60.18 E-value=1.6 Score=26.00 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=23.4 Q Q4EGI0_LISMN/1 41 KNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDF 77 (86) Q Consensus 41 kNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ 77 (86) +..+--++-||+.+|+|.+ ++ + |..|+=|.. T Consensus 49 ~~~i~~~l~~L~~~gfI~~--~~---~-l~~T~lG~~ 79 (85) T d2p6ra1 49 SYELERVVRQLENWGMVVE--AA---H-LAPTKLGSL 79 (85) T ss_dssp HHHHHHHHHHHHHTTSEEE--SS---S-EEECHHHHH T ss_pred HHHHHHHHHHHHHCcCccc--CC---e-eeecHHHHH Confidence 3445568999999999988 22 4 888988864 No 57 >d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]} Probab=59.97 E-value=1.7 Score=29.58 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=30.2 Q Q4EGI0_LISMN/1 39 FTKNELLYCVYWLEFHGYIKRNKNN------DEKRYYSITL 73 (86) Q Consensus 39 ~TkNElL~~~YwLE~~gyi~R~~~~------~~~r~Ys~T~ 73 (86) -+..|+-.++-=|+..||+++.+.. ++.+||.+|. T Consensus 50 P~hsevY~~LheL~~dg~lk~~k~~~~~~~~qeIvyY~~td 90 (120) T d1bm9a_ 50 PNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKD 90 (120) T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESC T ss_pred CCHhHHHHHHHHHHhcchhhhcccCCCCCcceeEEEEEecc Confidence 4678999999999999999987665 4589999998 No 58 >d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]} Probab=58.29 E-value=1.9 Score=26.65 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=35.7 Q Q4EGI0_LISMN/1 6 EKLILQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYY 69 (86) Q Consensus 6 e~li~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Y 69 (86) +..++++|-.... ..++.++.-.+-+- +..+++=+--.+-.|+..|||.|...+.-.+|. T Consensus 9 E~~vl~~lw~~~~-~~t~~ei~~~~~~~---~~~~~stv~~~l~rL~~kG~l~r~~~~r~~~y~ 68 (122) T d2g9wa1 9 ERAVMDHLWSRTE-PQTVRQVHEALSAR---RDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYA 68 (122) T ss_dssp HHHHHHHHHTCSS-CEEHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEC---CCEEE T ss_pred HHHHHHHHHhcCC-CcCHHHHHHHHhcc---CCCCHhHHHHHHHHHHHCCCEEEeccCCcEEEE Confidence 4445555544322 24666665555441 345666677778889999999999987555533 No 59 >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Probab=57.15 E-value=2 Score=24.78 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=30.7 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKG 75 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG 75 (86) +.|+..+-..+==|+..|+|.+...+.... |++|.++ T Consensus 47 ~~s~~tvs~~l~~L~~~glv~~~~~~~~~~-y~l~~~~ 83 (98) T d1r1ta_ 47 GVSESAVSHQLRSLRNLRLVSYRKQGRHVY-YQLQDHH 83 (98) T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEE-EEESSHH T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEECCEEE-EEEChHH Confidence 578888888888999999999988877555 9999764 No 60 >d2gxbb1 a.4.5.19 (B:140-199) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} Probab=55.11 E-value=2.3 Score=24.26 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=34.4 Q Q4EGI0_LISMN/1 7 KLILQVLLFVKSP-NATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKR 67 (86) Q Consensus 7 ~li~~VL~~~ks~-~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r 67 (86) +-|+++|..+.+. -.+..+++.. =+.+|.++=..+|-||.-|+|.|... +-.+ T Consensus 2 ~~Ile~L~~~~~~~~~ta~elA~~-------lgl~K~~V~r~L~~L~~~G~V~~~~~-~pp~ 55 (60) T d2gxbb1 2 QRILKFLEELGEGKATTAHDLSGK-------LGTPKKEINRVLYSLAKKGKLQKEAG-TPPL 55 (60) T ss_dssp HHHHHHHHHTCTTCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEECSS-SSCC T ss_pred hHHHHHHHHccCCCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEeCCC-CCCc Confidence 4456666655211 2445555443 35678889999999999999999843 3444 No 61 >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} Probab=52.90 E-value=2.6 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=30.5 Q Q4EGI0_LISMN/1 38 NFTKN-ELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFL 78 (86) Q Consensus 38 ~~TkN-ElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~l 78 (86) ..++. ++=..+|=||..|.|.....+. .+ |++|.+|+.- T Consensus 30 gi~~~k~Vn~~Ly~Le~~glV~~~~~~~-~~-W~Lt~~gre~ 69 (73) T d1xmka1 30 GLTKARDINAVLIDMERQGDVYRQGTTP-PI-WHLTDKKRER 69 (73) T ss_dssp CGGGHHHHHHHHHHHHHTTSEEEECSSS-CE-EEECHHHHTT T ss_pred CCChHHHHHHHHHHHHHCCCeEecCCCC-Cc-eeechhhhhH Confidence 35667 8888999999999998774333 55 9999999853 No 62 >d1bjaa_ a.4.5.9 (A:) Transcription factor MotA, activation domain {Bacteriophage T4 [TaxId: 10665]} Probab=46.19 E-value=4 Score=26.41 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=28.5 Q Q4EGI0_LISMN/1 38 NFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQEL 82 (86) Q Consensus 38 ~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l 82 (86) ...|+=|--.+==|+..|+|... + .+ +++|++|+.++++- T Consensus 42 ~mdrstl~rnI~pL~r~GlVe~s--~--Dg-v~lT~eG~~~l~~A 81 (95) T d1bjaa_ 42 DLGNAVVNSNIGVLIKKGLVEKS--G--DG-LIITGEAQDIISNA 81 (95) T ss_dssp TSCHHHHHHHHHHHHTTTSEEEE--T--TE-EEECHHHHHHHHHH T ss_pred HhhHHHHHHhhHHHHHcCCeeec--C--Ce-eEEcHHHHHHHHHH Confidence 33455555556678999999922 3 33 99999999998763 No 63 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=45.79 E-value=4.1 Score=21.61 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=34.4 Q Q4EGI0_LISMN/1 21 ATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQ 80 (86) Q Consensus 21 ~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~ 80 (86) .+..+++-.+ ..++.-+-..+-.|+..|+|.+. ...+ |.++.++..+-. T Consensus 21 ~s~~eia~~l-------~is~~tv~r~l~~L~~~g~v~~~---~~~~-~~~~~~~~~~~~ 69 (75) T d1mkma1 21 VSVSEIAEKF-------NMSVSNAYKYMVVLEEKGFVLRK---KDKR-YVPGYKLIEYGS 69 (75) T ss_dssp BCHHHHHHHT-------TCCHHHHHHHHHHHHHTTSEEEC---TTSC-EEECTHHHHHHH T ss_pred CCHHHHHHHh-------CcCHHHHHHHHHHHHHCCCEEEc---CCCC-eeccHHHHHHHH Confidence 5666665433 34667788888999999999998 3345 788777655433 No 64 >d2p4wa_ a.4.5.64 (A:) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} Probab=43.37 E-value=4.7 Score=27.37 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=38.5 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKN----NDEKRYYSITLKGDFLL 79 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~----~~~~r~Ys~T~kG~~ll 79 (86) +...++.+++-.+ +.|..-+-.-+-=|+..|+|.+... |...+||++|+.|...+ T Consensus 26 ~g~~t~~eLa~~l-------~lS~~tvs~hL~~Le~~GlV~~~~~~~~~Gr~~~~Y~lt~~~~~~l 84 (197) T d2p4wa_ 26 KRPYFVSELSREL-------GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLEI 84 (197) T ss_dssp HSCEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEEE T ss_pred cCCcCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEeeccCCCCCeEEEEEChHHHHHH Confidence 3446666666543 2456666667777999999998854 45677899999886544 No 65 >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Probab=37.89 E-value=6.5 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=21.1 Q Q4EGI0_LISMN/1 50 WLEFHGYIKRNKNNDEKRYYSITLKGDFLLQ 80 (86) Q Consensus 50 wLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~ 80 (86) -|+..|++.++.. .+ |..|..|..|-+ T Consensus 57 ~L~~~g~~~~~~~---g~-y~~t~~s~~l~~ 83 (85) T d1tw3a1 57 HLVAIGLLEEDAP---GE-FVPTEVGELLAD 83 (85) T ss_dssp HHHHTTSEEEEET---TE-EEECTTGGGGST T ss_pred HHHHCCCEEeCCC---Ce-EECCHHHHHhhc Confidence 4788999998743 35 999999988754 No 66 >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=36.57 E-value=7 Score=23.49 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=20.3 Q Q4EGI0_LISMN/1 50 WLEFHGYIKRNKNNDEKRYYSITLKGDFLLQ 80 (86) Q Consensus 50 wLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~ 80 (86) =||..|+|.|. .+ ..- +..|.+|-.++- T Consensus 48 ~Le~~GlI~r~-~~-~~G-~~~t~~~~~~~~ 75 (87) T d1stza1 48 KLEYLGYIYQP-HT-SAG-RIPTDKGLRFYY 75 (87) T ss_dssp HHHHTTSEECC-SS-CSC-BEECHHHHHHHH T ss_pred HHHHCcCeecc-CC-CCC-ccccHHHHHHHH Confidence 59999999983 22 333 688999977653 No 67 >d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]} Probab=33.97 E-value=8.3 Score=25.54 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=37.4 Q Q4EGI0_LISMN/1 31 IQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYY---SITLKGDFLLQEL 82 (86) Q Consensus 31 i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Y---s~T~kG~~ll~~l 82 (86) =-|+....++++++=-=+-+|...|||.... + --+|| .+|++|..+|+.= T Consensus 54 ~tyG~gk~~s~~~w~~lirqLi~~GyL~~~~-~-y~~~~~vL~LT~kg~~~L~~~ 106 (144) T d2axla1 54 SLFGTGKDQTESWWKAFSRQLITEGFLVEVS-R-YNKFMKICALTKKGRNWLHKA 106 (144) T ss_dssp TTTTGGGGSCHHHHHHHHHHHHHHSSEEEET-T-SCTTTCEEEECHHHHHHHHHT T ss_pred CccCCCCCCCHHHHHHHHHHHHHcCCceecc-c-ccccCceeEECHHHHHHHcCC Confidence 3467777899998888888999999999743 1 11323 8999999988643 No 68 >d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Probab=32.06 E-value=9.3 Score=21.62 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.7 Q Q4EGI0_LISMN/1 69 YSITLKGDFLLQELKN 84 (86) Q Consensus 69 Ys~T~kG~~ll~~l~~ 84 (86) ..+|+.|..+++.+.. T Consensus 55 ~~lT~~g~~l~~~~~~ 70 (89) T d1ixca1 55 IELTAAGHAFLEDARR 70 (89) T ss_dssp CCBCHHHHHHHHHHHH T ss_pred eeECHHHHHHHHHHHH Confidence 8899999999987754 No 69 >d1on2a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=32.00 E-value=9.3 Score=19.88 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=28.6 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNND 64 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~ 64 (86) ++..++.+++-.+ +.|++=+-..+-=|+..|||.|..+|. T Consensus 19 ~~~~~~~~ia~~l-------~vs~~tv~~~l~~L~~~g~v~~~~~g~ 58 (61) T d1on2a1 19 KGYARVSDIAEAL-------AVHPSSVTKMVQKLDKDEYLIYEKYRG 58 (61) T ss_dssp HSSCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEETTTE T ss_pred cCCcCHHHHHHHh-------CCCHHHHHHHHHHHHHCCCEEeccCCc Confidence 3445555555433 357777888888999999999997664 No 70 >d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]} Probab=28.77 E-value=12 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.4 Q Q4EGI0_LISMN/1 25 SLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKR 59 (86) Q Consensus 25 ~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R 59 (86) |....|+=||+.|..+|.=|+=++|+|...|++.. T Consensus 3 ~~~~~~ViFGatGDLA~rKL~PAL~~L~~~g~Lp~ 37 (196) T d1h9aa1 3 EIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQK 37 (196) T ss_dssp CCCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCS T ss_pred CCCeEEEEeCCchHHHHhHHHHHHHHHHHCCCCCC Confidence 34456888999999999999999999999999863 No 71 >d1w7pd2 a.4.5.54 (D:450-566) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=28.61 E-value=12 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=27.0 Q Q4EGI0_LISMN/1 33 FEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYS 70 (86) Q Consensus 33 ~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys 70 (86) ++..-...+.+|+.| |..|.|-||..++-.|||. T Consensus 76 ~~wS~~va~E~L~~a----e~~G~lcrDesieGl~fy~ 109 (117) T d1w7pd2 76 SNWTLGILMEVLQNC----VDEGDLLIDKQLSGIYYYK 109 (117) T ss_dssp CCBCHHHHHHHHHHH----HHTTSEEEEEETTEEEEEE T ss_pred ccccHHHHHHHHHHH----HHCCCeEEECCCccEEEEe Confidence 444445577788766 8999999999999999884 No 72 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=28.10 E-value=12 Score=19.69 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=18.2 Q Q4EGI0_LISMN/1 39 FTKNELLYCVYWLEFHGYIKRNKNN 63 (86) Q Consensus 39 ~TkNElL~~~YwLE~~gyi~R~~~~ 63 (86) .|++=+-..+==||..|||.|...+ T Consensus 35 ~s~~tv~~~l~~L~~~gli~~~~~g 59 (63) T d2isya1 35 QSGPTVSQTVSRMERDGLLRVAGDR 59 (63) T ss_dssp CCHHHHHHHHHHHHHTTSEEECTTS T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCC Confidence 4555555556668999999998775 No 73 >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Pyrococcus horikoshii [TaxId: 53953]} Probab=27.65 E-value=12 Score=19.06 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=25.1 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNK 61 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~ 61 (86) ++-.++.+|+-.+ ..|++.+-..+=.|+..|||.|.. T Consensus 15 ~~~~s~~~la~~l-------~~s~~tv~~~l~~L~~~g~i~r~~ 51 (60) T d2cyya1 15 DGKAPLREISKIT-------GLAESTIHERIRKLRESGVIKKFT 51 (60) T ss_dssp CTTCCHHHHHHHH-------CSCHHHHHHHHHHHHHHTSSCCCC T ss_pred cCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCceEeee Confidence 3445555555443 456777777788899999998754 No 74 >d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=25.96 E-value=14 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=14.1 Q Q4EGI0_LISMN/1 69 YSITLKGDFLLQELKN 84 (86) Q Consensus 69 Ys~T~kG~~ll~~l~~ 84 (86) +++|++|..+++++.. T Consensus 60 ~~lT~~g~~~~~~~~~ 75 (89) T d2esna1 60 MQPTQRAEHLAAAVAA 75 (89) T ss_dssp EEECHHHHHHHHHHHH T ss_pred EeECHHHHHHHHHHHH Confidence 8999999999988764 No 75 >d2dtra1 a.4.5.24 (A:4-64) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]} Probab=25.72 E-value=14 Score=19.33 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=27.3 Q Q4EGI0_LISMN/1 18 SPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNND 64 (86) Q Consensus 18 s~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~ 64 (86) ++..+..+++-.+ ..|+.-+-..+=-||..|||.|..++. T Consensus 19 ~~~~~~~eia~~l-------~~s~~tvs~~l~~L~~~g~I~~~~~g~ 58 (61) T d2dtra1 19 GVTPLRARIAERL-------EQSGPTVSQTVARMERDGLVVVASDRS 58 (61) T ss_dssp TCCCBHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEECTTSB T ss_pred CCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEEeCCCc Confidence 4445555555443 346666667778899999999987664 No 76 >d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]} Probab=23.30 E-value=17 Score=22.29 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=32.2 Q Q4EGI0_LISMN/1 20 NATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLK 74 (86) Q Consensus 20 ~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~k 74 (86) ..++.++.-.+-.. ...+++=+--.+==|+.-|||.|.+.|-.-.|+....+ T Consensus 20 ~~t~~ei~~~l~~~---~~~~~~Tv~t~L~rL~~Kg~i~r~~~g~~~~Y~~~vs~ 71 (122) T d1sd4a_ 20 SVSANEIVVEIQKY---KEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKE 71 (122) T ss_dssp SEEHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCH T ss_pred CcCHHHHHHHhhcc---cCCcHhhHHHHHHHHHHCCCEEEEecCCcEEEEecCCH Confidence 55666665444321 33455556666777999999999988765554433333 No 77 >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Probab=21.80 E-value=19 Score=20.16 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=30.5 Q Q4EGI0_LISMN/1 10 LQVLLFVKSPNATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKR 59 (86) Q Consensus 10 ~~VL~~~ks~~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R 59 (86) .+||.+.+++. .=.-+++.-|.-. +..++.+++-.++=.|...|+|.. T Consensus 9 ~~Vl~~i~~~~-~~~Gv~v~eI~~~-l~~~~~~~V~~al~~L~~eG~IYs 56 (69) T d1dpua_ 9 NQVLNLIKACP-RPEGLNFQDLKNQ-LKHMSVSSIKQAVDFLSNEGHIYS 56 (69) T ss_dssp HHHHHHHHHCC-CTTTEEHHHHHHH-STTSCHHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHhCC-CcCCccHHHHHHH-hcCCCHHHHHHHHHHHHHCCeEec Confidence 45666666542 2223444433222 223688999999999999999975 No 78 >d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]} Probab=20.23 E-value=21 Score=27.86 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=41.4 Q Q4EGI0_LISMN/1 20 NATINSLSFEFIQFEGARNFTKNELLYCVYWLEFHGYIKRNKNNDEKRYYSITLKGDFLLQELK 83 (86) Q Consensus 20 ~~~i~~ls~~~i~~~~~~~~TkNElL~~~YwLE~~gyi~R~~~~~~~r~Ys~T~kG~~ll~~l~ 83 (86) -+|--+|--.|=+.++-...||.+.+-.++ ..|||.++++ + +..|..|..+.+-|. T Consensus 457 ryTeatLi~~Me~~GIGTpATra~iI~~L~---~r~Yi~~~~k----~-l~pT~~G~~l~~~L~ 512 (556) T d1gkub3 457 PFTQSEIIQMMKERGIGRPSTYATIVDRLF---MRNYVVEKYG----R-MIPTKLGIDVFRFLV 512 (556) T ss_dssp CBCHHHHHHHHHHHTCCCTTTHHHHHHHHH---HTTSEEEETT----E-EEECHHHHHHHHHHH T ss_pred CCCHHHHHHHhhcCCCCCCccHHHHHHHHh---hCceEEEeCC----E-EEEchHHHHHHHHHH Confidence 455555655555566667889999988875 7899998653 4 889999999877653 Done!