Query A3JUX7_9RHOB/355-480 Match_columns 126 No_of_seqs 16 out of 16 Neff 3.8 Searched_HMMs 19247 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1yvra2 c.62.1.5 (A:364-537) 6 98.3 4.5E-10 2.3E-14 83.1 0.0 94 1-94 8-109 (174) 2 d1v7pc_ c.62.1.1 (C:) Integrin 97.2 6.3E-07 3.3E-11 63.0 0.0 94 1-94 4-115 (193) 3 d3n2na_ c.62.1.1 (A:) automate 97.2 8.5E-07 4.4E-11 61.6 0.0 94 1-94 10-118 (185) 4 d1u0oc1 c.62.1.1 (C:507-702) v 97.1 1.1E-06 5.5E-11 62.0 0.0 94 1-94 9-120 (196) 5 d3gxba_ c.62.1.0 (A:) automate 96.9 3.1E-06 1.6E-10 59.2 0.0 94 1-94 5-118 (178) 6 d1ijba_ c.62.1.1 (A:) von Will 96.8 5.6E-06 2.9E-10 58.6 0.0 94 1-94 16-127 (202) 7 d4a0qa_ c.62.1.1 (A:) automate 96.8 6E-06 3.1E-10 58.0 0.0 94 1-94 4-115 (192) 8 d1shux_ c.62.1.1 (X:) Capillar 96.7 7.5E-06 3.9E-10 56.0 0.0 94 1-94 8-114 (181) 9 d2b2xa1 c.62.1.1 (A:146-336) I 96.7 7.7E-06 4E-10 57.4 0.0 94 1-94 4-115 (191) 10 d1mjna_ c.62.1.1 (A:) Integrin 96.7 8.1E-06 4.2E-10 56.6 0.0 93 1-94 5-115 (179) 11 d2ok5a1 c.62.1.1 (A:200-452) C 96.6 1.2E-05 6.4E-10 60.3 0.0 94 1-94 47-168 (253) 12 d1n3ya_ c.62.1.1 (A:) Integrin 96.4 2.1E-05 1.1E-09 54.2 0.0 93 1-94 5-115 (189) 13 d1mf7a_ c.62.1.1 (A:) Integrin 96.3 3.1E-05 1.6E-09 54.0 0.0 93 1-94 8-118 (194) 14 d1q0pa_ c.62.1.1 (A:) Compleme 96.2 4.3E-05 2.2E-09 54.4 0.0 94 1-94 4-125 (209) 15 d1atza_ c.62.1.1 (A:) von Will 96.0 9.1E-05 4.7E-09 51.3 0.0 80 1-81 5-93 (184) 16 d1jeyb2 c.62.1.4 (B:6-241) Ku8 83.4 0.16 8.4E-06 39.0 0.0 97 1-98 5-139 (236) 17 d1uzdc1 d.73.1.1 (C:1-134) Rib 68.0 0.93 4.8E-05 32.8 0.0 56 11-76 75-131 (134) 18 d1uzhc1 d.73.1.1 (C:1-122) Rib 64.8 1.2 6.2E-05 31.6 0.0 57 10-76 62-119 (122) 19 d2v6ai_ d.73.1.1 (I:) automate 63.2 1.3 6.9E-05 32.2 0.0 55 11-75 81-136 (140) 20 d1b74a1 c.78.2.1 (A:1-105) Glu 62.1 1.4 7.5E-05 29.7 0.0 34 9-42 40-73 (105) 21 d1pd0a3 c.62.1.2 (A:301-552) S 60.2 1.6 8.5E-05 32.8 0.0 44 2-45 7-56 (252) 22 d1wdds_ d.73.1.1 (S:) Ribulose 52.0 2.8 0.00014 29.7 0.0 35 10-44 73-108 (122) 23 d3ct6a1 c.54.1.2 (A:1-123) PTS 51.5 2.9 0.00015 29.0 0.0 31 68-98 43-74 (123) 24 d8ruci_ d.73.1.1 (I:) Ribulose 50.5 3.1 0.00016 29.5 0.0 35 10-44 74-109 (123) 25 d3b48a1 c.54.1.2 (A:1-132) Unc 49.3 3.3 0.00017 28.9 0.0 41 58-98 33-77 (132) 26 d3rubs_ d.73.1.1 (S:) Ribulose 48.7 3.4 0.00018 29.2 0.0 35 10-44 74-109 (123) 27 d1svdm1 d.73.1.1 (M:3-110) Rib 47.9 3.6 0.00019 28.5 0.0 38 11-49 62-100 (108) 28 d1ir1s_ d.73.1.1 (S:) Ribulose 47.8 3.6 0.00019 29.1 0.0 34 11-44 75-109 (123) 29 d2qtva3 c.62.1.2 (A:120-390) S 47.7 3.6 0.00019 31.5 0.0 42 2-45 6-49 (271) 30 d1rbli_ d.73.1.1 (I:) Ribulose 46.3 3.9 0.0002 28.3 0.0 35 10-44 61-96 (109) 31 d1gk8i_ d.73.1.1 (I:) Ribulose 41.7 5.2 0.00027 28.4 0.0 38 11-49 81-119 (126) 32 d1bwvs_ d.73.1.1 (S:) Ribulose 38.4 6.3 0.00033 28.4 0.0 35 10-44 55-90 (138) 33 d1rqpa2 c.132.1.1 (A:8-192) 5' 36.5 7.1 0.00037 29.4 0.0 47 3-49 32-79 (185) 34 d1bxni_ d.73.1.1 (I:) Ribulose 35.0 7.7 0.0004 27.5 0.0 35 10-44 55-90 (129) 35 d2p7ja2 d.110.6.2 (A:9-180) GG 28.5 12 0.00061 26.1 0.0 70 12-94 10-80 (172) 36 d2q3la1 c.13.2.2 (A:1-125) Unc 27.5 13 0.00065 25.0 0.0 37 2-38 20-57 (125) 37 d2hf5a1 a.39.1.5 (A:81-113) Tr 27.2 13 0.00067 17.1 0.0 18 6-23 15-32 (33) 38 d1u0ka1 d.21.1.2 (A:2-130) Hyp 26.9 13 0.00068 24.9 0.0 55 2-67 21-75 (129) 39 d1xuba1 d.21.1.2 (A:1-128) Phe 25.2 15 0.00076 24.7 0.0 55 2-67 21-75 (128) 40 d3fx7a_ a.25.5.1 (A:) automate 24.2 16 0.00082 24.1 0.0 28 11-38 2-29 (84) 41 d1ctaa_ a.39.1.5 (A:) Troponin 24.2 16 0.00082 16.9 0.0 18 6-23 16-33 (34) 42 d1meoa_ c.65.1.1 (A:) Glycinam 23.5 17 0.00086 26.7 0.0 32 63-94 6-39 (205) 43 d1nlfa_ c.37.1.11 (A:) Hexamer 23.3 17 0.00088 26.2 0.0 41 3-43 136-182 (274) 44 d2j0wa1 c.73.1.3 (A:3-294) Asp 22.7 18 0.00092 27.8 0.0 39 61-100 191-229 (292) 45 d1tyeb2 c.62.1.1 (B:107-354) I 22.5 18 0.00093 27.6 0.0 32 1-32 8-45 (248) 46 d1txna_ d.248.1.1 (A:) Copropo 21.8 19 0.00098 28.3 0.0 11 66-76 151-161 (269) 47 d1t72a_ a.7.12.1 (A:) Phosphat 21.6 19 0.001 24.5 0.0 15 64-78 2-16 (215) 48 d2ooka1 c.13.2.2 (A:2-126) Hyp 20.7 21 0.0011 23.8 0.0 37 2-38 19-56 (125) 49 d1jmva_ c.26.2.4 (A:) Universa 20.6 21 0.0011 21.8 0.0 37 1-42 5-41 (140) 50 d1mjha_ c.26.2.4 (A:) "Hypothe 20.4 21 0.0011 22.7 0.0 36 3-43 8-43 (160) 51 d2cdqa1 c.73.1.3 (A:25-328) As 20.2 21 0.0011 27.6 0.0 40 60-100 200-239 (304) No 1 >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=98.26 E-value=4.5e-10 Score=83.05 Aligned_cols=94 Identities=23% Similarity=0.303 Sum_probs=64.7 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAEL--ARFAAEIAA----ILRRTRAEVHVLACDEKVSSVQKFRPEAWESKISEVELTGGGGTDFRPV 74 (126) Q Consensus 1 l~v~iDtSGSI~~~~l--~~f~aEi~~----I~rr~~A~v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggGGTdf~pv 74 (126) +.|++|+||||+...- ..-++|+++ .+-|...++.|+.||+++.....=......+.+..+....|||||+... T Consensus 8 ~lv~vDvSgSM~~~~~~s~~~~~~~Aa~la~~~~~~~~~v~v~~F~~~~~~~~~~~~~~l~~~~~~~~~~~~GgTdl~~~ 87 (174) T d1yvra2 8 FLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALP 87 (174) T ss_dssp EEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECCSCCTTSCHHHHHHHHTTCCCSCCCTTHH T ss_pred EEEEEECCCCCCCCcCCCcchHHHHHHHHHHHHcCcCCceEEEEeCCccEeCCCCccchHHHHHHHHhhCCCCCccHHHH Confidence 3578999999984211 113344444 3445666799999999765554333334455567777778999999999 Q A3JUX7_9RHOB/3 75 LEWADRHRPDAAVV--LTDLEG 94 (126) Q Consensus 75 ~e~a~~~~P~~~vv--lTDl~g 94 (126) |+||.++++...++ |||.+. T Consensus 88 l~~a~~~~~~~d~~iviTD~e~ 109 (174) T d1yvra2 88 MLWAQKTNTAADIFIVFTDCET 109 (174) T ss_dssp HHHHHHTTCCCSEEEEEECCCC T ss_pred HHHHHhcCCCCCEEEEEcCCcc Confidence 99999876665554 999744 No 2 >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Probab=97.22 E-value=6.3e-07 Score=63.04 Aligned_cols=94 Identities=22% Similarity=0.242 Sum_probs=63.3 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISD-AELARFAAEIAAILR--RTRAEVHVLACDEKVSSVQKFR----PEAWESKISEVELTGGGGTDFRP 73 (126) Q Consensus 1 l~v~iDtSGSI~~-~~l~~f~aEi~~I~r--r~~A~v~vl~~D~~v~~~~~~~----~~~~~~~~~~v~l~ggGGTdf~p 73 (126) +++.+|.||||++ ..+.+|+.++-.-.. .....+.|+.|.++++....+. .....+.+..++..|||||.... T Consensus 4 v~~vlD~S~Sm~~~~~~k~~~~~l~~~l~~~~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~t~~~~ 83 (193) T d1v7pc_ 4 VVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFG 83 (193) T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHH T ss_pred EEEEEECCCCchhHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCCceEEEECCCCCCHHHHHHHHHhhhccCCCCCcHHH Confidence 5788999999997 344444444433332 2235588999988887765444 22345556677788877899999 Q A3JUX7_9RHOB/3 74 VLEWADRH-R----------PDAAVVLTDLEG 94 (126) Q Consensus 74 v~e~a~~~-~----------P~~~vvlTDl~g 94 (126) .++++.++ . |...++|||... T Consensus 84 al~~~~~~~~~~~~~~r~~~~~~iillTDG~~ 115 (193) T d1v7pc_ 84 AIQYARKYAYSAASGGRRSATKVMVVVTDGES 115 (193) T ss_dssp HHHHHHHHTTSGGGTCCTTSEEEEEEEESSCC T ss_pred HHHHHHHhhcCcccCCCCCCCeEEEEEcCCCC Confidence 99988874 1 345566999765 No 3 >d3n2na_ c.62.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]} Probab=97.16 E-value=8.5e-07 Score=61.61 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=60.6 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISD--AELARFAAEIAAILRRTRAEVHVLACDEKVSSVQKFR--PEAWESKISEVEL-TGGGGTDFRPVL 75 (126) Q Consensus 1 l~v~iDtSGSI~~--~~l~~f~aEi~~I~rr~~A~v~vl~~D~~v~~~~~~~--~~~~~~~~~~v~l-~ggGGTdf~pv~ 75 (126) |++++|+||||+. ..+.+|+.++..-.-.-...+.++.|++..+....+. .......+..+.- ..||||++...| T Consensus 10 iv~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~vgiv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~t~~~~al 89 (185) T d3n2na_ 10 LYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGF 89 (185) T ss_dssp EEEEEECSGGGTTTHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHH T ss_pred EEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCCCHHHHHHHHHHHhhhcCCCCccHHHHH Confidence 4688999999964 3334444433333222356799999999887776653 2334444555542 358889999999 Q A3JUX7_9RHOB/3 76 EWADRHR----------PDAAVVLTDLEG 94 (126) Q Consensus 76 e~a~~~~----------P~~~vvlTDl~g 94 (126) +++.+.. +...+++||... T Consensus 90 ~~~~~~~~~~~~~~~~~~~~iilitDG~~ 118 (185) T d3n2na_ 90 ERASEQIYYENRQGYRTASVIIALTDGEL 118 (185) T ss_dssp HHHHHHHHHHHTTTBCEEEEEEEEECCCC T ss_pred HHHHHHHhhccccCCCCCcEEEEEcCCCC Confidence 9988633 234455999654 No 4 >d1u0oc1 c.62.1.1 (C:507-702) von Willebrand factor A1 domain, vWA1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=97.12 E-value=1.1e-06 Score=61.98 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=63.4 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDA---ELARFAAEIAAIL--RRTRAEVHVLACDEKVSSVQKFR----PEAWESKISEVELTGGGGTDF 71 (126) Q Consensus 1 l~v~iDtSGSI~~~---~l~~f~aEi~~I~--rr~~A~v~vl~~D~~v~~~~~~~----~~~~~~~~~~v~l~ggGGTdf 71 (126) |++.+|+||||++. .+.+|+.++-.-+ ......+.++.+.+.++....+. .......+..+...||++|+. T Consensus 9 i~fllD~S~S~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~v~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~gg~~t~~ 88 (196) T d1u0oc1 9 LVFLLDGSSMLSEAEFEVLKAFVVGMMERLHISQKRIRVAVVEYHDGSRAYLELKARKRPSELRRITSQIKYTGSQVAST 88 (196) T ss_dssp EEEEEECBSSSCHHHHHHHHHHHHHHHTTBCBCSSSEEEEEEEESSSEEEEECSSCCSCHHHHHHHHHTCCCCCBSCCCH T ss_pred EEEEEeCCCCcCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCceEEEEcCCcCCHHHHHHHHHhCcCCCCCcchH Confidence 56889999999974 4455555544333 12245588899988887665553 234555677888888777998 Q A3JUX7_9RHOB/3 72 RPVLEWADR---------HRPDAAVVLTDLEG 94 (126) Q Consensus 72 ~pv~e~a~~---------~~P~~~vvlTDl~g 94 (126) ...++++.+ ..+...|+|||... T Consensus 89 ~~al~~~~~~~~~~~~r~~~~~~ivlitdG~~ 120 (196) T d1u0oc1 89 SEVLKYTLFQIFGKIDRPEASHITLLLTASQE 120 (196) T ss_dssp HHHHHHHHHTTTSSCSCTTSEEEEEEEECSCC T ss_pred HHHHHHHHHHhccccCCCCCCEEEEEEeCCCC Confidence 888888764 33345666999655 No 5 >d3gxba_ c.62.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]} Probab=96.90 E-value=3.1e-06 Score=59.23 Aligned_cols=94 Identities=21% Similarity=0.336 Sum_probs=62.5 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAE---LARFAAEIAAILR--RTRAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDF 71 (126) Q Consensus 1 l~v~iDtSGSI~~~~---l~~f~aEi~~I~r--r~~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf 71 (126) +++.+|+||||++.. +.+|+.++-.-+. .....+.++.|.++++....+.. ......+..++..||+||.. T Consensus 5 i~fvlD~S~Sm~~~~~~~~~~~~~~~~~~l~~~~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gg~~t~~ 84 (178) T d3gxba_ 5 VAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGNRTNT 84 (178) T ss_dssp EEEEEECSTTTCHHHHHHHHHHHHHHHHTSCBCTTSEEEEEEEESSSEEEEECTTSCCCHHHHHHHHHTCCCCCCSCCCH T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCCCCHHHHHHHHHhCcCCCCCcccH Confidence 467899999999764 4444444333222 22456889999888876554442 22344567888888778999 Q A3JUX7_9RHOB/3 72 RPVLEWADRH--------R---PDAAVVLTDLEG 94 (126) Q Consensus 72 ~pv~e~a~~~--------~---P~~~vvlTDl~g 94 (126) ...++++.++ | +...++|||.+. T Consensus 85 ~~al~~~~~~~~~~~~~~r~~~~~~iillTDG~~ 118 (178) T d3gxba_ 85 GLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPA 118 (178) T ss_dssp HHHHHHHHHTGGGSCCGGGGGSCEEEEEEECSCC T ss_pred HHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCC Confidence 9999998874 2 244555999654 No 6 >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Probab=96.77 E-value=5.6e-06 Score=58.63 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=65.5 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRT-----RAEVHVLACDEKVSSVQKFR----PEAWESKISEVELTGGGGTDF 71 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~-----~A~v~vl~~D~~v~~~~~~~----~~~~~~~~~~v~l~ggGGTdf 71 (126) |++.+|.||||++..+.+...=+..+.+++ ..++.++.|.++.+....+. .......+..+...||++|.. T Consensus 16 i~fllD~S~Sm~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vv~fs~~~~~~~~l~~~~~~~~~~~~v~~~~~~g~~~t~~ 95 (202) T d1ijba_ 16 LVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVAST 95 (202) T ss_dssp EEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCH T ss_pred EEEEEeCCCCcCHHHHHHHHHHHHHHHHheecCCCCeEEEEEEEcCCceEEEecCCcCCHHHHHHHHHhCcCCCCCcchH Confidence 568899999999877666666666666666 35689999988877665542 334556677788887766888 Q A3JUX7_9RHOB/3 72 RPVLEWADR------HR---PDAAVVLTDLEG 94 (126) Q Consensus 72 ~pv~e~a~~------~~---P~~~vvlTDl~g 94 (126) .-.++++.+ .+ +...++|||... T Consensus 96 ~~al~~~~~~~~~~~~r~~~~~~~illtdG~~ 127 (202) T d1ijba_ 96 SEVLKYTLFQIFSKIDRPEASRIALLLMASQE 127 (202) T ss_dssp HHHHHHHHHHTSSSCSCTTSEEEEEEEECCCC T ss_pred HHHHHHHHHHHhccccCCCCCEEEEEEecCCC Confidence 777776653 13 345566999654 No 7 >d4a0qa_ c.62.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]} Probab=96.75 E-value=6e-06 Score=58.05 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=59.1 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISD-AELARFAAEIAAILR--RTRAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDFRP 73 (126) Q Consensus 1 l~v~iDtSGSI~~-~~l~~f~aEi~~I~r--r~~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf~p 73 (126) |++.+|+||||++ ..+.+|+.++-.-+. .....+.|+.|.+.++....+.. ......+..++..||+||...- T Consensus 4 i~fllD~S~Sm~~~~~~~~~~~~~~~~l~~~~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~t~~~~ 83 (192) T d4a0qa_ 4 IVIVLDGSNSIYPWDSVTAFLNDLLERMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTAL 83 (192) T ss_dssp EEEEEECSTTSCCHHHHHHHHHHHHTTSCBSTTSEEEEEEEESSSEEEEECTTSCSSHHHHHHHHHTCCCCCCSSCCHHH T ss_pred EEEEEECCCCcccHHHHHHHHHHHHHhcCcCCCceEEEEEEEcCCccEEEecCCCCCHHHHHHHHHhhhccCCCCCcHHH Confidence 5788999999995 122233333322221 12356889999998877665542 1234445566676776898888 Q A3JUX7_9RHOB/3 74 VLEWADRH-----------RPDAAVVLTDLEG 94 (126) Q Consensus 74 v~e~a~~~-----------~P~~~vvlTDl~g 94 (126) .++++.++ .+...|++||... T Consensus 84 al~~a~~~~~~~~~~~r~~~~~~lvllTdG~~ 115 (192) T d4a0qa_ 84 GTDTARKEAFTEARGARRGVKKVMVIVTDGES 115 (192) T ss_dssp HHHHHHHTTTSGGGTCCTTCEEEEEEEESSCC T ss_pred HHHHHHHhhcCcccCCCCCCCeEEEEEecCCC Confidence 88887643 2345566999764 No 8 >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Probab=96.70 E-value=7.5e-06 Score=55.99 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=57.4 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAEL--ARFAAEIAAILRRTRAEVHVLACDEKVSSVQKFRPE--AWESKISEVEL-TGGGGTDFRPVL 75 (126) Q Consensus 1 l~v~iDtSGSI~~~~l--~~f~aEi~~I~rr~~A~v~vl~~D~~v~~~~~~~~~--~~~~~~~~v~l-~ggGGTdf~pv~ 75 (126) |++.+|+||||..... .+|+.++..-..+-..++.++.|+++.+....+... .....+..+.. ..||||++-..+ T Consensus 8 v~~~~D~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al 87 (181) T d1shux_ 8 LYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGL 87 (181) T ss_dssp EEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHH T ss_pred EEEEEECCCCchhcHHHHHHHHHHHHHHcCCCCcEEEEEEEcCCceEEEecCCCHHHHHHHHHHhhccCCCCCchHHHHH Confidence 5688999999995322 122222222111234679999999988777665431 12223333331 238899999999 Q A3JUX7_9RHOB/3 76 EWADRHR--------PDAAVVLTDLEG 94 (126) Q Consensus 76 e~a~~~~--------P~~~vvlTDl~g 94 (126) +++.+.- +...+++||.+. T Consensus 88 ~~a~~~l~~~~~~~~~~~ii~itDg~~ 114 (181) T d1shux_ 88 KLANEQIQKAGGLKTSSIIIALTDGKL 114 (181) T ss_dssp HHHHHHHHHHTGGGSCEEEEEEECCCC T ss_pred HHHHHHHHhcCCCCCCeEEEEECCCCc Confidence 9888642 334555999664 No 9 >d2b2xa1 c.62.1.1 (A:146-336) Integrin alpha1-beta1 {Norway rat (Rattus norvegicus) [TaxId: 10116]} Probab=96.69 E-value=7.7e-06 Score=57.41 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=59.7 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISD-AELARFAAEIAAILR--RTRAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDFRP 73 (126) Q Consensus 1 l~v~iDtSGSI~~-~~l~~f~aEi~~I~r--r~~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf~p 73 (126) |++.||+|+||+. ..+.+|..++..-.. .....+.|+.+.+.++....+.. ......+..++..||+||..-. T Consensus 4 ivfllD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~r~~vv~f~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~t~~~~ 83 (191) T d2b2xa1 4 IVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTAL 83 (191) T ss_dssp EEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHH T ss_pred EEEEEECCCCcccHHHHHHHHHHHHHhcCcCCCCcEEEEEEECCcccEEEeCCCCCCHHHHHHHHHhccccCCCCCcHHH Confidence 5788999999995 333344433322221 12356889999988876655442 1234446667777777899888 Q A3JUX7_9RHOB/3 74 VLEWADRH-----------RPDAAVVLTDLEG 94 (126) Q Consensus 74 v~e~a~~~-----------~P~~~vvlTDl~g 94 (126) .++++.++ .|...|+|||... T Consensus 84 al~~~~~~~~~~~~~~r~~~~~~vvlltdG~~ 115 (191) T d2b2xa1 84 GIDTARKEAFTEARGARRGVKKVMVIVTDGES 115 (191) T ss_dssp HHHHHHHTTSSGGGTCCTTSEEEEEEEESSCC T ss_pred HHHHHHHhhcCcccCCCCCCCeEEEEEecCCC Confidence 88888664 2245556999664 No 10 >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Probab=96.68 E-value=8.1e-06 Score=56.58 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=61.4 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRT---RAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDFRP 73 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~---~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf~p 73 (126) |++.+|.|+||++..+.+...-+..+..+. ...+.|+.|.++++....+.. ......+..++..| |+|+... T Consensus 5 i~fllD~S~Sm~~~~~~~~~~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~t~~~~ 83 (179) T d1mjna_ 5 LVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHML-LLTNTFG 83 (179) T ss_dssp EEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCC-BCCCHHH T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEECCCceEEEecCccCCHHHHHHHHHhCccCC-CCccHHH Confidence 568899999999965544444444444444 456999999998887654443 12334455565554 7899998 Q A3JUX7_9RHOB/3 74 VLEWADRH--------RP---DAAVVLTDLEG 94 (126) Q Consensus 74 v~e~a~~~--------~P---~~~vvlTDl~g 94 (126) .|+++.+. || .+.|++||... T Consensus 84 al~~a~~~~~~~~~g~r~~~~~~ivl~tdG~~ 115 (179) T d1mjna_ 84 AINYVATEVFREELGARPDATKVLIIITDGEA 115 (179) T ss_dssp HHHHHHHHTSSGGGTCCTTSEEEEEEEESSCC T ss_pred HHHHHHHHhcCcccCCCCCCCeEEEEECCCCC Confidence 88888653 33 45666999644 No 11 >d2ok5a1 c.62.1.1 (A:200-452) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Probab=96.57 E-value=1.2e-05 Score=60.29 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=60.6 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRT-----RAEVHVLACDEKVSSVQKFRPE------AWESKISEVELT---GG 66 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~-----~A~v~vl~~D~~v~~~~~~~~~------~~~~~~~~v~l~---gg 66 (126) |++.+|+|+||+...+...-.=+..+.+++ ...+.++.|+++++....+... ...+.+..++.. -| T Consensus 47 ivfvlD~S~Sm~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~l~~~i~~i~~~~~~~~ 126 (253) T d2ok5a1 47 IYLVLDGSDSIGASNFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLK 126 (253) T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSTTTTCHHHHHHHHHTCCCC----- T ss_pred EEEEEeCCCCCCcccHHHHHHHHHHHHHHhhcCCCCcEEEEEEecCCceEEeccCCCCCCCHHHHHHHHHhCCcccCCCC Confidence 568899999999855443333333344433 3479999999998877655531 234456666665 37 Q A3JUX7_9RHOB/3 67 GGTDFRPVLEWADRHR--------------PDAAVVLTDLEG 94 (126) Q Consensus 67 GGTdf~pv~e~a~~~~--------------P~~~vvlTDl~g 94 (126) |||++...|+++.++. +...++|||.+. T Consensus 127 g~T~~~~al~~a~~~~~~~~~~~r~~~~~~~~vivllTDG~~ 168 (253) T d2ok5a1 127 SGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLH 168 (253) T ss_dssp -CBCHHHHHHHHHHHHCC---CCCTTGGGEEEEEEEEESCCC T ss_pred CCccHHHHHHHHHHHHhhhhccccccccCCCeEEEEECCCCC Confidence 8999999999888764 234555999653 No 12 >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Probab=96.43 E-value=2.1e-05 Score=54.25 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=60.5 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRT---RAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDFRP 73 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~---~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf~p 73 (126) +++.+|+|+||....+.+...-++.+..+. ...+.++.|.+.++....+.. ......+..+... ||||++.. T Consensus 5 i~~vlD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~~~~~~~~l~~~~~~~~~~~~i~~~~~~-~g~t~~~~ 83 (189) T d1n3ya_ 5 IVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQL-QGFTYTAT 83 (189) T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCCCC-CSCBCHHH T ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHHHhCCCCCcEEEEEEECCCceEEEecccCCCHHHHHHHHHhCcCC-CCCchHHH Confidence 468899999999876555444444444444 356999999998876655443 2334445555554 57788888 Q A3JUX7_9RHOB/3 74 VLEWADRHR-----------PDAAVVLTDLEG 94 (126) Q Consensus 74 v~e~a~~~~-----------P~~~vvlTDl~g 94 (126) .++.+.+.- +...|+|||... T Consensus 84 al~~a~~~~~~~~~~~~~~~~~~~v~ltDG~~ 115 (189) T d1n3ya_ 84 AIQNVVHRLFHASYGARRDAAKILIVITDGKK 115 (189) T ss_dssp HHHHHHTTTTSGGGTCCTTSEEEEEEEESSCC T ss_pred HHHHHHHHHcccccCCCCCCCeEEEEECCCCC Confidence 888885532 234555998533 No 13 >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Probab=96.31 E-value=3.1e-05 Score=54.02 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=58.6 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRT---RAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDFRP 73 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~---~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf~p 73 (126) |++.+|+|+||++..+.....-+..+.++. ...+.|+.|.++++....+.. ......+..+... ||+|++.- T Consensus 8 i~~vlD~S~Sm~~~~~~~~~~~~~~l~~~l~~~~~~v~vv~fs~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~g~t~~~~ 86 (194) T d1mf7a_ 8 IAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQL-LGRTHTAT 86 (194) T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHHHSCCHHHHHTTCCCC-CSCBCHHH T ss_pred EEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEECCcceEEEeCCccCCHHHHHHHHHhCcCC-CCCccHHH Confidence 578999999999964443333333333333 466889999988777655442 1233445555554 46688888 Q A3JUX7_9RHOB/3 74 VLEWADRH-----------RPDAAVVLTDLEG 94 (126) Q Consensus 74 v~e~a~~~-----------~P~~~vvlTDl~g 94 (126) .+.++.++ .+...++|||... T Consensus 87 al~~~~~~~~~~~~~~~~~~~~~iilltdG~~ 118 (194) T d1mf7a_ 87 GIRKVVRELFNITNGARKNAFKILVVITDGEK 118 (194) T ss_dssp HHHHHHHTTTSGGGTCCTTSEEEEEEEESSCC T ss_pred HHHHHHHHhcccccCCCCCCCeEEEEEcCCCC Confidence 88777552 2345566999654 No 14 >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Probab=96.22 E-value=4.3e-05 Score=54.38 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=62.4 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAE---LARFAAEIAAILRRT--RAEVHVLACDEKVSSVQKFRP------EAWESKISEVELTG---G 66 (126) Q Consensus 1 l~v~iDtSGSI~~~~---l~~f~aEi~~I~rr~--~A~v~vl~~D~~v~~~~~~~~------~~~~~~~~~v~l~g---g 66 (126) +++++|.|+||+... +.+|+..+-.-...+ ...+.|+.|.+..+....+.. ......+..++..| + T Consensus 4 iv~vlD~S~Sm~~~~~~~~k~~~~~l~~~l~~~~~~~~v~vv~f~~~~~~~~~l~~~~~~~~~~l~~~v~~i~~~~~~~~ 83 (209) T d1q0pa_ 4 IYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLK 83 (209) T ss_dssp EEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCT T ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEcCCCceeecCCCCCCCCHHHHHHHHhcCCccccccC Confidence 578999999999844 445555544322222 347899999988877655443 12345566677765 6 Q A3JUX7_9RHOB/3 67 GGTDFRPVLEWADRHR--------------PDAAVVLTDLEG 94 (126) Q Consensus 67 GGTdf~pv~e~a~~~~--------------P~~~vvlTDl~g 94 (126) |||.+...|+++.++- +...|+|||... T Consensus 84 ~~t~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ivl~tDG~~ 125 (209) T d1q0pa_ 84 SGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLH 125 (209) T ss_dssp TCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCC T ss_pred CCccHHHHHHHHHHHHHhhhccCcccccCCceEEEEECCCCC Confidence 8999999998887763 134455999653 No 15 >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Probab=95.97 E-value=9.1e-05 Score=51.34 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=51.4 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRT-----RAEVHVLACDEKVSSVQKFRP----EAWESKISEVELTGGGGTDF 71 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~-----~A~v~vl~~D~~v~~~~~~~~----~~~~~~~~~v~l~ggGGTdf 71 (126) +++.+|.||||++..+.....=+..+.++. ...+.|+.|+++++..-.+.. ..-...+..++. .||+|++ T Consensus 5 iv~llD~S~Sm~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vv~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~t~~ 83 (184) T d1atza_ 5 VILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQR-EGGPSQI 83 (184) T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCC-CCCCCCH T ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHHHhcCCCCCceEEEEEEECCceeEEEeCCCCCCHHHHHHHHHhhhc-CCCCchH Confidence 568899999999855444333333344433 367999999998877655431 111223444455 4678999 Q A3JUX7_9RHOB/3 72 RPVLEWADRH 81 (126) Q Consensus 72 ~pv~e~a~~~ 81 (126) ...+..+.++ T Consensus 84 ~~al~~a~~~ 93 (184) T d1atza_ 84 GDALGFAVRY 93 (184) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH Confidence 8888888765 No 16 >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=83.43 E-value=0.16 Score=38.99 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=51.2 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAE---LARFAAEIAAIL---R-R----TRAEVHVLACDEKVSS--------------VQKFRPEAWE 55 (126) Q Consensus 1 l~v~iDtSGSI~~~~---l~~f~aEi~~I~---r-r----~~A~v~vl~~D~~v~~--------------~~~~~~~~~~ 55 (126) ++++||+|.||.+.. ..+|..-+..+. + + -.-+|.||.|.+.-+. .+.+.+..|+ T Consensus 5 tVfvIDvs~sM~~~~~g~~S~fe~A~~~v~~~iq~Ki~~~~kD~VgvVlfGt~~T~N~l~~~~~y~nI~v~~~l~~ps~~ 84 (236) T d1jeyb2 5 VVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFD 84 (236) T ss_dssp EEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHH T ss_pred EEEEEECChhhcccCCCCCChHHHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccCCCCeEEeecCCCCCHH Confidence 478999999997653 122322222221 2 1 1367888888776332 2233344455 Q A3JUX7_9RHOB/3 56 SKISEVE--LTGGG-GTDFRPVLEWADRHR-------P--D-AAVVLTDLEGPPGP 98 (126) Q Consensus 56 ~~~~~v~--l~ggG-GTdf~pv~e~a~~~~-------P--~-~~vvlTDl~gp~~~ 98 (126) . +.+++ +..+. ..||.-.+-.|..+- . . -.++|||+.+|.+. T Consensus 85 ~-L~~L~~~l~~~~~~~d~~dAL~VA~d~l~~~~~~kK~~~R~IiL~TD~~~p~~~ 139 (236) T d1jeyb2 85 L-LEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK 139 (236) T ss_dssp H-HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC T ss_pred H-HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhccCcCceEEEEEeCCCCCcCh Confidence 4 56664 44443 456654443332211 1 1 23459999887653 No 17 >d1uzdc1 d.73.1.1 (C:1-134) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Probab=67.99 E-value=0.93 Score=32.78 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=36.4 Q A3JUX7_9RHOB/3 11 ISDAELARFAAEIAAILRRTRAE-VHVLACDEKVSSVQKFRPEAWESKISEVELTGGGGTDFRPVLE 76 (126) Q Consensus 11 I~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggGGTdf~pv~e 76 (126) ++..+.++-++||++-++.++-+ |+|+.+|.+ ...+.+.. |.. ...|-++|+|+=+ T Consensus 75 fg~~d~~~Vl~EIeaC~~~~p~~YVRLiGfD~~-~q~q~~~f------IV~---RP~~~~~~~~~~~ 131 (134) T d1uzdc1 75 FGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQ-KQVQIMGF------LVQ---RPKTARDFQPANK 131 (134) T ss_dssp TTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETT-TTEEEEEE------EEE---CCC-----CCTTT T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC-CCEEEEEE------EEE---CCCCCCCCcCccc Confidence 45567788999999999999666 999999988 33344443 333 3466788887644 No 18 >d1uzhc1 d.73.1.1 (C:1-122) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Probab=64.80 E-value=1.2 Score=31.64 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=40.5 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVSSVQKFRPEAWESKISEVELTGGGGTDFRPVLE 76 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggGGTdf~pv~e 76 (126) .++..+.++-++||++-++.++.+ |+|+.+|.+. ..+.+.. |. -..+|..+|+|+-+ T Consensus 62 ~f~~~d~~~Vl~ele~C~~~hp~~YVRLiG~D~~~-q~r~~sf------IV---~RP~~~~~~~~~~~ 119 (122) T d1uzhc1 62 MFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQK-QVQIMGF------LV---QRPKTARDFQPANK 119 (122) T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTT-TEEEEEE------EE---ECCTTCCSSCCGGG T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEECCC-CEEEEEE------EE---ECCCCCCCccCccc Confidence 456667889999999999999766 9999999873 3334433 33 33456677877643 No 19 >d2v6ai_ d.73.1.1 (I:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Probab=63.21 E-value=1.3 Score=32.15 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=38.5 Q A3JUX7_9RHOB/3 11 ISDAELARFAAEIAAILRRTRAE-VHVLACDEKVSSVQKFRPEAWESKISEVELTGGGGTDFRPVL 75 (126) Q Consensus 11 I~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggGGTdf~pv~ 75 (126) ++-.+.++-++||++-++.++-. |+|+.||.+ ...+.+.. |..- ..|-.||+++= T Consensus 81 fg~~d~~qVl~EI~~C~k~~P~~YVRligfD~~-~q~q~~sf------IV~R---P~~~~~~~~~~ 136 (140) T d2v6ai_ 81 FGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQ-KQVQIMGF------LVQR---PKTARDFQPAN 136 (140) T ss_dssp TTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETT-TTEEEEEE------EEEC---CTTCCSCCCGG T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC-CCEEEEEE------EEeC---CCCCCCccCcc Confidence 44556788899999999999666 999999988 34444444 3332 34566677653 No 20 >d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]} Probab=62.08 E-value=1.4 Score=29.72 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=31.2 Q A3JUX7_9RHOB/3 9 GSISDAELARFAAEIAAILRRTRAEVHVLACDEK 42 (126) Q Consensus 9 GSI~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~ 42 (126) |+-+.+++.+++.|+..-+.+.+++..|++|++. T Consensus 40 G~ks~~~i~~~~~~~~~~L~~~g~~~iViACNTA 73 (105) T d1b74a1 40 GIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTA 73 (105) T ss_dssp GGSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHH T ss_pred CcCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCch Confidence 6778899999999999999999999999999874 No 21 >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=60.24 E-value=1.6 Score=32.80 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=36.2 Q A3JUX7_9RHOB/3 2 AVAIDTSGS-ISDAELARFAAEIAAILRRTR-----AEVHVLACDEKVSS 45 (126) Q Consensus 2 ~v~iDtSGS-I~~~~l~~f~aEi~~I~rr~~-----A~v~vl~~D~~v~~ 45 (126) +..||+|-. +...+++.++.-|...+..++ +.|-+|.||++|+= T Consensus 7 vFvIDvS~~av~~g~l~~~~~sl~~~l~~l~~~~~~~~Vgiitfd~~v~~ 56 (252) T d1pd0a3 7 CFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHY 56 (252) T ss_dssp EEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEE T ss_pred EEEEECCHHHhhhhHHHHHHHHHHHHHHhccCCCCCeEEEEEEeCCEEEE Confidence 467999874 677899999999999998874 57999999988763 No 22 >d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} Probab=52.05 E-value=2.8 Score=29.65 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=29.2 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) -++..+.++-++||++-++.++.+ |+||.+|.+.+ T Consensus 73 mf~~~d~~~Vl~Eie~C~~~~p~~YVRligfD~~~q 108 (122) T d1wdds_ 73 MFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQ 108 (122) T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTT T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCC Confidence 355667888999999999999666 99999998843 No 23 >d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]} Probab=51.45 E-value=2.9 Score=29.01 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.4 Q A3JUX7_9RHOB/3 68 GTDFRPVLEWADRHRPDAAVVLTDLEG-PPGP 98 (126) Q Consensus 68 GTdf~pv~e~a~~~~P~~~vvlTDl~g-p~~~ 98 (126) ||++.-+.+.+.+...+=.+|||||-+ |+.. T Consensus 43 gt~~~~I~~ai~~~~gdGVLil~DLGSa~~n~ 74 (123) T d3ct6a1 43 GTSFDRVMNAIEENEADNLLTFFDLGSARMNL 74 (123) T ss_dssp SCCHHHHHHHHHHSSCSEEEEEESSGGGHHHH T ss_pred cchHHHHHHHHHhcCCCcEEEEEeCCcHHHHH Confidence 899999999988855555566999944 6653 No 24 >d8ruci_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=50.47 E-value=3.1 Score=29.50 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=29.2 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) -++..+.++-++||++-++.++.+ |+|+.+|.+-+ T Consensus 74 mf~~~d~~~Vl~EieaC~~~~p~~YVRligfD~~~q 109 (123) T d8ruci_ 74 MFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRE 109 (123) T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTT T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCC Confidence 355667889999999999999666 99999998843 No 25 >d3b48a1 c.54.1.2 (A:1-132) Uncharacterized protein EF1359 {Enterococcus faecalis [TaxId: 1351]} Probab=49.25 E-value=3.3 Score=28.88 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=28.8 Q A3JUX7_9RHOB/3 58 ISEVELTGGG--GTDFRPVLEWADRHRPDAAVV-LTDLEG-PPGP 98 (126) Q Consensus 58 ~~~v~l~ggG--GTdf~pv~e~a~~~~P~~~vv-lTDl~g-p~~~ 98 (126) +.-+.++.+| ||++.-+.+.+.+....-.|+ ||||-+ |+.. T Consensus 33 i~~~g~~~~~~~gt~~~~I~~aI~~~d~gdGVLil~DLGss~~n~ 77 (132) T d3b48a1 33 IHSLGGTSDGSLGSDPMKIIDTINEADSDREFLIFADLGSAVLSS 77 (132) T ss_dssp EEECCSCSSSSSSCCHHHHHHHHHHSCSSCEEEEEECSHHHHHHH T ss_pred EEEeecCCCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCcHhHH Confidence 3444443344 889999999998887766666 999944 7554 No 26 >d3rubs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097]} Probab=48.73 E-value=3.4 Score=29.22 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=29.2 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) -++..+.++-++||++-++.++.+ |+||.+|.+.+ T Consensus 74 mf~~~d~~~Vl~EieaC~~~~p~~YVRLiGfD~~~q 109 (123) T d3rubs_ 74 MFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQ 109 (123) T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTT T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCC Confidence 355667888999999999999666 99999998743 No 27 >d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]} Probab=47.93 E-value=3.6 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=30.0 Q A3JUX7_9RHOB/3 11 ISDAELARFAAEIAAILRRTRAE-VHVLACDEKVSSVQKF 49 (126) Q Consensus 11 I~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~~~~~~ 49 (126) ++..+.++-++||++-++.++-+ |+|+.+|.+- ..+.+ T Consensus 62 f~~~d~~~Vl~eie~C~~~~p~~YVRLiG~D~~~-q~q~~ 100 (108) T d1svdm1 62 FGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYA-QSLGL 100 (108) T ss_dssp TTCCCHHHHHHHHHHHHHHSTTSEEEEEEEETTT-TEEEE T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCc-cEEEE Confidence 45567788899999999999666 9999999984 34433 No 28 >d1ir1s_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=47.80 E-value=3.6 Score=29.12 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=28.8 Q A3JUX7_9RHOB/3 11 ISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 11 I~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) ++..+.++-++||++-++.++.. |+|+.+|.+.+ T Consensus 75 f~~~d~~~Vl~EieaC~~~~p~~YVRliGfD~~~q 109 (123) T d1ir1s_ 75 FGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQ 109 (123) T ss_dssp TTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTT T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCC Confidence 45667889999999999999666 99999998843 No 29 >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=47.67 E-value=3.6 Score=31.53 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.4 Q A3JUX7_9RHOB/3 2 AVAIDTSGSISDAELARFAAEIAAILRRT--RAEVHVLACDEKVSS 45 (126) Q Consensus 2 ~v~iDtSGSI~~~~l~~f~aEi~~I~rr~--~A~v~vl~~D~~v~~ 45 (126) +..||+|-. ..+++.++..|...+..+ ++.|-+|.||+.|+= T Consensus 6 vFvIDvs~~--a~~l~~l~~si~~~L~~lP~~~~VGlITfd~~V~~ 49 (271) T d2qtva3 6 FFVVDLTSE--TENLDSLKESIITSLSLLPPNALIGLITYGNVVQL 49 (271) T ss_dssp EEEEECCSC--HHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEE T ss_pred EEEEECCcc--HHHHHHHHHHHHHHHHhCCCCcEEEEEEeCCEEEE Confidence 357899664 345999999999999888 455999999999864 No 30 >d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]} Probab=46.30 E-value=3.9 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=29.7 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) .++..+.++-++||++-++.++-+ |+|+.+|.+.+ T Consensus 61 ~f~~~d~~~Vl~eie~C~~~hp~~YVRLig~D~~~q 96 (109) T d1rbli_ 61 LFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKE 96 (109) T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTT T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEECCCC Confidence 456667888999999999999666 99999999854 No 31 >d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Probab=41.68 E-value=5.2 Score=28.41 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=29.2 Q A3JUX7_9RHOB/3 11 ISDAELARFAAEIAAILRRTRAE-VHVLACDEKVSSVQKF 49 (126) Q Consensus 11 I~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~~~~~~ 49 (126) ++-.+.++-++||++-++.++-. |+|+.||.+ +..+.+ T Consensus 81 fg~~d~~qVl~Eie~C~~~~p~~YVRligfD~~-~q~q~~ 119 (126) T d1gk8i_ 81 FGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQ-KQVQIM 119 (126) T ss_dssp TTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETT-TTEEEE T ss_pred cCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC-CCEEEE Confidence 34456788899999999999665 999999976 444433 No 32 >d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]} Probab=38.37 E-value=6.3 Score=28.37 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=29.7 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) .++..+.++-++||++.++.++-+ |+|+.+|.+.. T Consensus 55 mf~~~d~~~Vl~EieaC~~~hp~~YVRLigfD~~~~ 90 (138) T d1bwvs_ 55 LFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRG 90 (138) T ss_dssp BCSCCCHHHHHHHHHHHHHHCTTSEEEEEEEECCTT T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEECCCc Confidence 355667889999999999999665 99999999875 No 33 >d1rqpa2 c.132.1.1 (A:8-192) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]} Probab=36.51 E-value=7.1 Score=29.38 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=40.0 Q A3JUX7_9RHOB/3 3 VAIDTSGSISDAELARFAAEIAAILRRTRA-EVHVLACDEKVSSVQKF 49 (126) Q Consensus 3 v~iDtSGSI~~~~l~~f~aEi~~I~rr~~A-~v~vl~~D~~v~~~~~~ 49 (126) -+||.|-||...++.+-+-=+....+-.+. +|||..+|..|-+.++- T Consensus 32 ~IVDitH~i~pfdi~~aA~~L~~~~~~fP~gTVhl~vVDPgvGt~r~~ 79 (185) T d1rqpa2 32 TVVDVCHSMTPWDVEEGARYIVDLPRFFPEGTVFATTTYPATGTTTRS 79 (185) T ss_dssp EEEEEESCSCTTCHHHHHHTTTTCGGGSCTTCEEEEECCTTTTSSCCC T ss_pred eEEEeeCCCCCCCHHHHHHHHHHhcccCCCCcEEEEEECCCCCCCccc Confidence 378999999999999888888888877766 69999999988776654 No 34 >d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]} Probab=35.04 E-value=7.7 Score=27.54 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=29.8 Q A3JUX7_9RHOB/3 10 SISDAELARFAAEIAAILRRTRAE-VHVLACDEKVS 44 (126) Q Consensus 10 SI~~~~l~~f~aEi~~I~rr~~A~-v~vl~~D~~v~ 44 (126) .++..+.++-++||++-++.++-+ |+|+.+|.+.. T Consensus 55 ~f~~~d~~~Vl~eieaC~~~hp~~YVRLiG~D~~~~ 90 (129) T d1bxni_ 55 MFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHT 90 (129) T ss_dssp BTTCCCHHHHHHHHHHHHHHCSSSEEEEEEECTTTC T ss_pred CcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCc Confidence 456677889999999999999666 99999998864 No 35 >d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]} Probab=28.49 E-value=12 Score=26.05 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=47.6 Q A3JUX7_9RHOB/3 12 SDAELARFAAEIAAILRRTRAEVHVLACDEKVSSVQKFRPEAWESKISEVELTGGGGTDFRPVLEWADRHRPDAAVV-LT 90 (126) Q Consensus 12 ~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggGGTdf~pv~e~a~~~~P~~~vv-lT 90 (126) +..+|+....|++.+..++...+.+|+.+..+.+...=....+.. .+.-.|....+..|...-+ |. T Consensus 10 a~~~l~~~~~~l~~~l~~~~~~~~~La~~~~l~~~l~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~irli 76 (172) T d2p7ja2 10 ALHQLAYTGREYNNIQDQIETISDLLGHSQSLYDYLREPSKANLT-------------ILENMWSSVARNQKLYKQIRFL 76 (172) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHSCCHHHHH-------------HHHHHHHHHHHHHCCEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHhCCCHHHHH-------------HHHHHHHHHHhcCCCeeEEEEE Confidence 456788888999999999999999999988887755422211111 2333455566667766655 77 Q A3JUX7_9RHOB/3 91 DLEG 94 (126) Q Consensus 91 Dl~g 94 (126) |.+| T Consensus 77 d~~G 80 (172) T d2p7ja2 77 DTSG 80 (172) T ss_dssp CTTS T ss_pred CCCC Confidence 7766 No 36 >d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]} Probab=27.48 E-value=13 Score=25.04 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=30.5 Q A3JUX7_9RHOB/3 2 AVAIDTSGSISDAELARFAAEIAAILRRT-RAEVHVLA 38 (126) Q Consensus 2 ~v~iDtSGSI~~~~l~~f~aEi~~I~rr~-~A~v~vl~ 38 (126) ++++-.||-|+.+++.+|...++...++. .-+++|++ T Consensus 20 vl~v~v~G~lt~~D~~~~~~~l~~~l~~~~~~ki~ll~ 57 (125) T d2q3la1 20 YLAFKAVGKLTHEDYEQMTPLLESALAGIKTPEIVALI 57 (125) T ss_dssp EEEEEEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEEE T ss_pred EEEEEEecccCHHHHHHHHHHHHHHHHhccCCCEEEEE Confidence 46788999999999999999999998885 44577654 No 37 >d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Probab=27.17 E-value=13 Score=17.07 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=13.5 Q A3JUX7_9RHOB/3 6 DTSGSISDAELARFAAEI 23 (126) Q Consensus 6 DtSGSI~~~~l~~f~aEi 23 (126) |-+|.|+..++.+++.++ T Consensus 15 ~~~g~i~~~~~~~~~~~~ 32 (33) T d2hf5a1 15 DGNGYISAAELRHVMTNL 32 (33) T ss_dssp SCCSCBCHHHHHHHTTSC T ss_pred CCCCcCcHHHHHHHHHHc Confidence 557888888888777654 No 38 >d1u0ka1 d.21.1.2 (A:2-130) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Probab=26.95 E-value=13 Score=24.91 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=33.2 Q A3JUX7_9RHOB/3 2 AVAIDTSGSISDAELARFAAEIAAILRRTRAEVHVLACDEKVSSVQKFRPEAWESKISEVELTGGG 67 (126) Q Consensus 2 ~v~iDtSGSI~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggG 67 (126) +|++|. ...++++|.+.+.|++ +..++-|.--++. ....++. |... +++.+.|-| T Consensus 21 ~Vv~~~-~~l~~~~m~~iA~e~~-----~~et~fi~~~~~~--~~~~vr~--f~~~-~e~~~CGh~ 75 (129) T d1u0ka1 21 AVFDDA-SALDDAAMQAWTRELR-----QFESIFLLPGDDP--RAFRARI--FTLE-EELPFAGHP 75 (129) T ss_dssp EEESCC-TTCCHHHHHHHHHHHC-----CSEEEEEEECSCT--TEEEEEE--EESS-CBCCSCCTH T ss_pred EEEECC-CCCCHHHHHHHHHHhC-----CCEEEEEEcCCCC--CeEEEEE--ECCC-cchhcCCcH Confidence 455676 4588999999998865 3455444433321 2223333 3444 788888887 No 39 >d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Probab=25.21 E-value=15 Score=24.72 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=33.5 Q A3JUX7_9RHOB/3 2 AVAIDTSGSISDAELARFAAEIAAILRRTRAEVHVLACDEKVSSVQKFRPEAWESKISEVELTGGG 67 (126) Q Consensus 2 ~v~iDtSGSI~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~v~~~~~~~~~~~~~~~~~v~l~ggG 67 (126) +|++|. ..++++++.+.+.|++ +.+++-|.--++. ..-.++. |... +++.+.|-| T Consensus 21 ~Vv~~~-~~l~~~~m~~iA~e~~-----~~et~fv~~~~~~--~~~~~r~--f~pd-~e~~~CGh~ 75 (128) T d1xuba1 21 AVFFDA-DDLPPAQMQRIAREMN-----LSESTFVLKPRNG--GDALIRI--FTPV-NELPFAGAP 75 (128) T ss_dssp EEECSG-GGSCHHHHHHHHHHHC-----SSCEEEEECCSSS--SSEEEEE--ECSS-CEESCCHHH T ss_pred EEEECC-CCCCHHHHHHHHHHhC-----CCEEEEEEecCCC--CcEEEEE--EcCC-ccccccCcH Confidence 344564 5788999999998864 3455555443321 2233333 3444 788888877 No 40 >d3fx7a_ a.25.5.1 (A:) automated matches {Helicobacter pylori [TaxId: 210]} Probab=24.22 E-value=16 Score=24.07 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.2 Q A3JUX7_9RHOB/3 11 ISDAELARFAAEIAAILRRTRAEVHVLA 38 (126) Q Consensus 11 I~~~~l~~f~aEi~~I~rr~~A~v~vl~ 38 (126) |++++|.+|+.|++.-...+.+++.-|. T Consensus 2 ~dpeElr~Fa~~L~~F~d~L~~~~~~L~ 29 (84) T d3fx7a_ 2 MDTEEVREFVGHLERFKELLREEVNSLS 29 (84) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5788999999999998888887776654 No 41 >d1ctaa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Probab=24.21 E-value=16 Score=16.92 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.5 Q A3JUX7_9RHOB/3 6 DTSGSISDAELARFAAEI 23 (126) Q Consensus 6 DtSGSI~~~~l~~f~aEi 23 (126) |-.|+|+..++.+++.++ T Consensus 16 ~~~g~i~~~~~~~~~~~l 33 (34) T d1ctaa_ 16 NADGYIDIEELGEILRAT 33 (34) T ss_dssp TCSSSBCHHHHHHHHCSC T ss_pred CCCCCCcHHHHHHHHHHc Confidence 456889988888877654 No 42 >d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Probab=23.49 E-value=17 Score=26.70 Aligned_cols=32 Identities=13% Similarity=0.406 Sum_probs=24.3 Q A3JUX7_9RHOB/3 63 LTGGGGTDFRPVLEWADRHRP--DAAVVLTDLEG 94 (126) Q Consensus 63 l~ggGGTdf~pv~e~a~~~~P--~~~vvlTDl~g 94 (126) |.-|+||+|.-++++.....+ .+.+|+||=.. T Consensus 6 ~~Sg~Gsn~~~l~~~~~~~~~~~ei~~vis~~~~ 39 (205) T d1meoa_ 6 LISGTGSNLQALIDSTREPNSSAQIDIVISNKAA 39 (205) T ss_dssp EESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTT T ss_pred EEeCCchHHHHHHHHHHcCCCCcEEEEEEECCcc Confidence 567899999999999776665 45566888543 No 43 >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Probab=23.33 E-value=17 Score=26.22 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=26.8 Q A3JUX7_9RHOB/3 3 VAIDTSGSI------SDAELARFAAEIAAILRRTRAEVHVLACDEKV 43 (126) Q Consensus 3 v~iDtSGSI------~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~v 43 (126) |+||.-.++ +..++.+|+.++..+.+++.+.|-++.-+.+- T Consensus 136 viiD~l~~~~~~d~n~~~~~~~~~~~L~~la~~~g~~vl~v~H~~k~ 182 (274) T d1nlfa_ 136 MVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 182 (274) T ss_dssp EEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--- T ss_pred EEEcChHHhCCCCCccHHHHHHHHHHHHHHHHHcCCEEEEEccCCcc Confidence 677873222 34577788888888888888777776666554 No 44 >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Probab=22.67 E-value=18 Score=27.81 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=26.6 Q A3JUX7_9RHOB/3 61 VELTGGGGTDFRPVLEWADRHRPDAAVVLTDLEGPPGPAP 100 (126) Q Consensus 61 v~l~ggGGTdf~pv~e~a~~~~P~~~vvlTDl~gp~~~~P 100 (126) +..-|.||.|+.-.+= |.....+..+++||-+|=....| T Consensus 191 ~ttLgrggsD~~A~~l-A~~l~A~~l~i~TdV~Gv~~~dP 229 (292) T d2j0wa1 191 TTTLGRGGSDYTAALL-AEALHASRVDIWTDVPGIYTTDP 229 (292) T ss_dssp EEECCTTHHHHHHHHH-HHHTTCSEEEEEESSSSEESSCT T ss_pred eeeccCCCchHHHHHH-HHHcCCCEEEEEeCCCCccCCCC Confidence 4445778889887653 34566777888999888433444 No 45 >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Probab=22.48 E-value=18 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=20.7 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDA------ELARFAAEIAAILRRTRA 32 (126) Q Consensus 1 l~v~iDtSGSI~~~------~l~~f~aEi~~I~rr~~A 32 (126) |.+.+|+||||.+. ...+++.|++.+..+.+- T Consensus 8 Ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~ 45 (248) T d1tyeb2 8 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRI 45 (248) T ss_dssp EEEEEECSGGGGGGHHHHHHHHHHHHHHHHHHCSCEEE T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHHHHHHhhCcCceE Confidence 46789999999985 234455566665555433 No 46 >d1txna_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=21.82 E-value=19 Score=28.34 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=9.3 Q A3JUX7_9RHOB/3 66 GGGTDFRPVLE 76 (126) Q Consensus 66 gGGTdf~pv~e 76 (126) |||+||+|... T Consensus 151 GGG~DLTP~y~ 161 (269) T d1txna_ 151 GGGADLTPSYL 161 (269) T ss_dssp EEEEEEECSSC T ss_pred cccccCCCCCC Confidence 78999999863 No 47 >d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Probab=21.57 E-value=19 Score=24.54 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=9.3 Q A3JUX7_9RHOB/3 64 TGGGGTDFRPVLEWA 78 (126) Q Consensus 64 ~ggGGTdf~pv~e~a 78 (126) .|||||.|--=++.+ T Consensus 2 ~~~~~~~~~~~L~~~ 16 (215) T d1t72a_ 2 GGGGGMKLFKELEET 16 (215) T ss_dssp CCTHHHHHHHHHHHH T ss_pred CCCchhhHHHHHHHH Confidence 367788885544443 No 48 >d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576 {Shewanella frigidimarina [TaxId: 56812]} Probab=20.68 E-value=21 Score=23.85 Aligned_cols=37 Identities=11% Similarity=0.295 Sum_probs=29.7 Q A3JUX7_9RHOB/3 2 AVAIDTSGSISDAELARFAAEIAAILRRT-RAEVHVLA 38 (126) Q Consensus 2 ~v~iDtSGSI~~~~l~~f~aEi~~I~rr~-~A~v~vl~ 38 (126) ++++-.||-++.+++.+|...++.-+++. .-++.|++ T Consensus 19 vi~v~v~G~lt~~D~~~~~~~le~~l~~~~~~ki~ll~ 56 (125) T d2ooka1 19 FVTLKAIGTLTHEDYLVITPMLEGALSQVDQPKVSLFL 56 (125) T ss_dssp EEEEEEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEE T ss_pred EEEEEEecccCHHHHHHHHHHHHHHHhhccCCcEEEEE Confidence 46777899999999999999999888885 44566554 No 49 >d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Probab=20.62 E-value=21 Score=21.75 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=23.9 Q A3JUX7_9RHOB/3 1 LAVAIDTSGSISDAELARFAAEIAAILRRTRAEVHVLACDEK 42 (126) Q Consensus 1 l~v~iDtSGSI~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~ 42 (126) |.|++|.|.. ...+.+++.+++ ++..++++++.+.+. T Consensus 5 Ilv~~d~s~~--~~~~l~~a~~la---~~~~a~l~~l~v~~~ 41 (140) T d1jmva_ 5 ILVAVDLSEE--SPILLKKAVGIA---KRHDAKLSIIHVDVN 41 (140) T ss_dssp EEEEECCSTT--HHHHHHHHHHHH---HHHTCEEEEEEEEEC T ss_pred EEEEeCCCHh--HHHHHHHHHHHH---hhcCCEEEEEEEecc Confidence 3567775543 444555665554 557899999998654 No 50 >d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Methanococcus jannaschii [TaxId: 2190]} Probab=20.42 E-value=21 Score=22.66 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=25.2 Q A3JUX7_9RHOB/3 3 VAIDTSGSISDAELARFAAEIAAILRRTRAEVHVLACDEKV 43 (126) Q Consensus 3 v~iDtSGSI~~~~l~~f~aEi~~I~rr~~A~v~vl~~D~~v 43 (126) |.+| +|-....+.+++.+ +.++..+.++++.+.+.- T Consensus 8 v~vd--~s~~s~~al~~A~~---la~~~~~~l~~l~v~~~~ 43 (160) T d1mjha_ 8 YPTD--FSETAEIALKHVKA---FKTLKAEEVILLHVIDER 43 (160) T ss_dssp EECC--SCHHHHHHHHHHHH---TCCSSCCEEEEEEEEEGG T ss_pred EEec--CCHHHHHHHHHHHH---HHhhcCCeEEEEEEecCc Confidence 4454 55566667777776 446778999999887764 No 51 >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=20.24 E-value=21 Score=27.64 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=26.7 Q A3JUX7_9RHOB/3 60 EVELTGGGGTDFRPVLEWADRHRPDAAVVLTDLEGPPGPAP 100 (126) Q Consensus 60 ~v~l~ggGGTdf~pv~e~a~~~~P~~~vvlTDl~gp~~~~P 100 (126) ++..-|.||+|+.-.+= |..+..+..+++||-+|=....| T Consensus 200 ~~ttlgRggsD~~A~~l-A~~l~A~~~~i~tDVdGv~~~dP 239 (304) T d2cdqa1 200 AVTTLGRGGSDLTATTI-GKALGLKEIQVWKDVDGVLTCDP 239 (304) T ss_dssp CEEECCTTHHHHHHHHH-HHHHTCSEEEEEESSSSSBSSCT T ss_pred ceEEeCCCCchHHHHHH-HHHcCCCEEEEeecCCCcccCCC Confidence 34555778888877653 34566777888999888333344 Done!